Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2252 125 6e-24 seq2162 107 2e-18 seq2318 87.8 2e-12 >seq2252 Length=1130325 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| || ||||||| | || || ||| ||| Sbjct 563385 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGGATCT 563326 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || |||||||| ||||| || ||| || |||||||| ||||| || ||||| Sbjct 563325 GATACTATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAAGGAATTCCCCCAGACCAG 563266 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || || ||||||| |||||| || ||| ||||| Sbjct 563265 CAGCGCTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTTTGTCCGACTACAAC 563206 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || ||| | || || Sbjct 563205 ATCCAGAAGGAATCGACCCTTCATCTCGTCCT 563174 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| || ||||||| |||| || || | ||| Sbjct 563738 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 563679 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 563678 GACACCATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 563619 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | || |||| |||||| || ||| ||||| Sbjct 563618 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 563559 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| ||| | || || Sbjct 563558 ATCCAGAAGGAATCTACGCTCCATCTGGTTCT 563527 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || ||||||| |||| || || | ||| Sbjct 563966 ATGCAAATCTTCGTCAAGACCCTCACGGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 563907 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| ||||| || || ||||| || || || Sbjct 563906 GACACTATCGAAAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 563847 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | || |||| |||||| | |||| ||||| Sbjct 563846 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCAGCGACTACAAC 563787 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || ||| |||| || Sbjct 563786 ATCCAGAAGGAATCGACCCTTCATCTAGTCCT 563755 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||||||||||| || ||||||| | ||||| ||| || Sbjct 562930 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTTGAGGGTTC 562871 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| || || |||| | ||||| | ||| || ||||| || || || || | Sbjct 562870 GGACACCATTGAAAACGTCA---AGGCAAAGATTCA-AGATAAAGAGGGAATCCCCCCAG 562815 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | || || ||||| || || | || |||| | || || ||| | Sbjct 562814 ATCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACCCTGTCCGACT 562755 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || |||||||| ||||| ||| | || || Sbjct 562754 ACAACATCCAGAAAGAATCTACGCTCCATCTGGTTCT 562718 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || ||||||||||| || ||||||| | || || ||| || Sbjct 562427 AATGCAGATCTTCGTGAAAACTTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGGTTC 562368 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| ||| ||| || || || || || || || ||||| Sbjct 562367 GGACACCATTGAGAACGTCAAGGCAAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCA 562308 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || || | || |||| |||||| || ||| ||||| Sbjct 562307 GCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAA 562248 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || || |||||||| || || Sbjct 562247 CATCCAGAAGGAATCCACCCTTCA 562224 >seq2162 Length=74254 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || ||||| || || ||||||| |||| || || || Sbjct 48642 AATGCAGATCTTCGTGAAAACGTTGACAGGAAAGACCATCACTCTCGAGGTTGAAGGATC 48701 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||| | |||||| |||| || || | ||| ||||||||||| ||||| || || | Sbjct 48702 TGACTCCATCGAGAACGTGAAAGCTAAGATTCAA-GACAAAGAAGGAATTCCCCCAGATC 48760 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || |||| || ||||| || ||| | || |||| ||||| || |||| || | Sbjct 48761 AACAACGTCTTATCTTCGCCGGAAAGCAACTGGAGGATGGCCGCACCTTGAGCGACTATA 48820 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || || || ||||| || || | || || | || ||||||||| Sbjct 48821 ACATCCAGAAGGAGTCCACTCTCCACCTTGTTCTTCGCCTCCGAGGAGGAA 48871 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || ||| | |||||| | ||||| ||| || Sbjct 48870 AATGCAGATTTTCGTGAAGACCCTCACGGGCAAAACGATCACATTGGAAGTCGAGGGCTC 48929 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| | ||||| |||| |||| || | ||| ||||||||||| || || || | Sbjct 48930 TGATTCGATCGAAAACGTCA---AAGCTAAGATTCAA-GACAAAGAAGGAATCCCCCCAG 48985 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | || ||||| || || ||| | || |||| |||||| || | || | Sbjct 48986 ATCAGCAGCGATTGATCTTTGCTGGGAAGCAACTTGAGGATGGCCGCACTTTGAGTGACT 49045 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || ||||| ||||| ||||| || || || || | || ||||||| Sbjct 49046 ATAACATCCAAAAGGAATCGACGCTTCACTTGGTCCTCCGTCTTCGAGGAGG 49097 >seq2318 Length=474513 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| ||| ||||||| |||| || ||| | ||| Sbjct 464880 ATGCAGATTTTCGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAGGTCGAGGCCTCT 464939 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| || || || || || || || ||||| Sbjct 464940 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATCCCCCCAGACCAG 464999 Query 25119 CAGCGGATTATTTTTGCCGGCAA 25141 ||||| | || |||||||| || Sbjct 465000 CAGCGCCTGATCTTTGCCGGTAA 465022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433312874686160