Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq2629 179 1e-40 seq2692 141 4e-29 seq2774 87.8 7e-13 >seq2629 Length=15125 Score = 179 bits (198), Expect = 1e-40 Identities = 255/355 (72%), Gaps = 8/355 (2%) Strand=Plus/Minus Query 58220 GGAGGCTGCTTAAT--GGCTAAACCAGCGCGAAGGAAATGCAAAATCTGTAAGGAATGGT 58277 |||||||| | ||| |||||| ||| |||| || |||||||| |||| || |||| Sbjct 352 GGAGGCTGTTAAATATGGCTAACCCAAGGCGACGGCGCTGCAAAATATGTAGAGAGTGGT 293 Query 58278 TTCACCCGGCATTCTCAAATCAGTGGTGGTGCAGCCCGGAACACGGAACTCAATTAGCAC 58337 |||| || | | |||| |||||| ||||| || |||||| | |||||||| Sbjct 292 TTCATCCCAAGTACGAAAATATAGAGTGGTGTAGCCCAGAGCACGGAGCAGAATTAGCAA 233 Query 58338 TCGAACGACGAAGCAAAGAACGCGAAAAAGCGGAAAAGGCAGCAGAGAAGAAACGAC-GA 58396 || | |||||||| || || | |||||| ||| || | |||||| || || Sbjct 232 TCAAGCGACGAAGTAAGGAGAGAGAAAAACTAGAA---GCCAAACTCAAGAAAGAACAGA 176 Query 58397 CGAGAGGAGCAGAAACAGAAAG--ATAAACTTAAGATTCGAAAACTCGCCTTAAAGCCCC 58454 | | || || || || | ||||||| || || || | || |||| |||| Sbjct 175 AGCAAAAAGAAGTAAAAGCCCGCGATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCC 116 Query 58455 GCAGTTACTGGATTAAACAAGCCCAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACC 58514 ||||||| |||||||||||||| ||||||||||| ||||| | |||||||||||||||| Sbjct 115 GCAGTTATTGGATTAAACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGAGACC 56 Query 58515 GCGACTTACCATGTATCTCGTGCGGAACGCTCACGTCTGCTCAGTGGGATGCCGG 58569 | || || ||||| || || ||||||||| | ||||||||||||||||| || Sbjct 55 GTGATTTGCCATGCATATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 114 bits (126), Expect = 5e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 54129 GTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGC 54188 || ||||| | || || |||| |||| || || || |||||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 54189 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 54246 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 54247 TGACGCAACTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGTGACT 54306 | || || || |||||| ||| ||| ||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 54307 CACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 54355 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 >seq2692 Length=686 Score = 141 bits (156), Expect = 4e-29 Identities = 264/380 (69%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 5327 ATTCTCGACCAGTTTCTGGATGAAAAAGAGGGTAACCACACTA-CGGCATACCGCGATGG 5385 ||||||| |||||| |||||||||||||||| |||| | || |||| || || |||| Sbjct 637 ATTCTCGCTCAGTTTTTGGATGAAAAAGAGGGCAACCG-ATTATCGGCGTATCGGGATGC 579 Query 5386 TTCCGGCATCTGGACCATCTGTCGGGGGGCCACGATGGTGGATGGAAAACCCGTTTTTCC 5445 | ||||||||||| ||||| ||||| | || | ||||| |||||| || Sbjct 578 AGCTGGCATCTGGACAATCTGCCGGGGCGTAACCCGAATTGATGGTGCTCCCGTTCGTCA 519 Query 5446 CGGTATGAAACTGTCGAAGGAAAAATGCGACCAGGTCAACGCCATTGAGCGTGATAAGGC 5505 |||||| ||||| | | | ||||| | ||||||||| || ||| |||| Sbjct 518 GGGTATGCAACTGACACCGAACCAATGCCGTGATCTCAACGCCAAAGAAGCAGATCAGGC 459 Query 5506 GCTGGCATGGGTGGAGAA-AAACATCAAAGTGCCATTGAGCGAACCCCAGAAAGCGGGGA 5564 | |||||||| |||| | || || |||||| ||| ||||| |||| ||| || | Sbjct 458 CGTTGCATGGGT-CAGAAGCCATATTAACGTGCCACTGACTGAACCACAGATAGCCGGCA 400 Query 5565 TCGCGTCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTATA 5624 | || ||||| || |||||||| || ||||||| || ||| | || ||||| || Sbjct 399 TTGCCAGTTTCTGCCCATACAACATCGGCCCCGGTAGATGCTTCTCTTCCACGTTCTACC 340 Query 5625 AACGAATTAATGCAGGTGAT-CGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGATTAAG 5683 | | | ||||| |||||| ||| ||| || ||| ||| ||| | ||||| Sbjct 339 GAAAACTGAATGCGGGTGATAGGCAAGGG-GCTTGTCAGGAAATTAAACGCTGGATATTT 281 Query 5684 GACGGTGGCAGAGACTGCCG 5703 ||||| |||||||| ||||| Sbjct 280 GACGGCGGCAGAGATTGCCG 261 >seq2774 Length=20939 Score = 87.8 bits (96), Expect = 7e-13 Identities = 202/300 (67%), Gaps = 11/300 (4%) Strand=Plus/Minus Query 6097 TTTATGTG--GTTAACCATAACGGCGAACCATACGTTCCCATGAAACCTGTCGTTGCGGG 6154 ||||||| || ||||| | || | ||||||||||| ||||||||| || ||| | Sbjct 535 TTTATGTATCGTAAACCACGAAGGTAAGCCATACGTTCCAATGAAACCTATCATTGAAGA 476 Query 6155 GATGGGGCTGGCCTGGCAATCACAGTTGGCTAAGTTAAGACAGCGTTTTGCGTCAAC-TA 6213 ||||| | | ||| || ||||| ||||| ||| | | || ||| || || || Sbjct 475 TATGGGTTTAGATTGGGCGTCGCAGTTTACTAAGCTAAAAAAACGCTTTA-GTAAAGGTA 417 Query 6214 TAACGGAAATCGTTATGGTTGCTGAGGATGGGAAACGACGCAAT--ATGGTGTCCCTGCC 6271 | |||||||| || | | | | || | ||||| ||| | | ||| | Sbjct 416 TTGTGGAAATCGCAATACCTTCGAAAGGCGGTGA-----GCAATCAATGATTTGCCTAGC 362 Query 6272 GCTTCGAAAACTTGCAGGCTGGTTACAAACCATCAATCCCAACAAAGTAAAACCCGAAAT 6331 | | ||| | |||| |||||| | | || | || |||||||| || || ||||| Sbjct 361 AATGCATAAATTATCAGGTTGGTTATATTCAATAATGCCTAACAAAGTTAAGCCTGAAAT 302 Query 6332 CCGCGGCAAGGTAATCCAGTATCAGGAAGAGTGTGACGATGTTCTCTATGAATACTGGAC 6391 ||| | ||| ||||||||||| || ||||| || ||||| || || ||||| || ||||| Sbjct 301 CCGAGACAAAGTAATCCAGTACCAAGAAGAATGCGACGACGTACTTTATGAGTATTGGAC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192633448313600