Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-22 >seq4 Length=195412 Score = 122 bits (134), Expect = 1e-22 Identities = 297/448 (66%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 93077 TAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCA 93136 || |||||||| | ||| |||||||| || | ||||| || || || |||| || Sbjct 71393 TACTTGTACATGAGGCAGGCAAAGTCACGGTGAAGGCCTTCATCGCGGGAAATCAGTTCG 71334 Query 93137 TTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA 93196 |||||| || | || || | || ||||| |||||||||||||| || | ||| || Sbjct 71333 TTGCTGTGAGTGAGTCCAGGCATGAGGCCTCGCTTCTTGAGCCAAAAGATGGCAGCGAAC 71274 Query 93197 CTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATAC--GTTCGGCAAAAT 93254 ||||| || || || ||||| ||||| || || || | || | |||| |||| Sbjct 71273 GACCCAGAGAAGAAGATTCCTTCAACGGCGGCGAACGCGATAACGCGAGTTC--CAAATG 71216 Query 93255 TTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTA 93314 ||| || || |||||| | |||||| || || || ||||| || ||||| | Sbjct 71215 AAGCGTTCTTGTCGCCGATCCAGCGCAGAGCCCAGTCCGCCTTCTTCTTGATGCAAGGGA 71156 Query 93315 GTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGA 93374 | ||| ||||| || || | ||||| | | ||| | ||| | || | Sbjct 71155 ACTCGTGGATGGCGTTGAAAAGAACGTTGCGCTCCTTTGGATCGACGACGTAAGCTTCAA 71096 Query 93375 TTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAAC 93434 | | | || ||||| || || |||| || | || || ||||| | |||||| Sbjct 71095 TCATCTTGGAGTACATCTCCGAGTGGATGCCTTCGACGGCCATCTGGAAGCTGTAGAAGG 71036 Query 93435 ATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTA 93494 | ||||| | |||| || || || | || | ||| ||||| ||||||||||| | Sbjct 71035 ACAAGGCTTCTGGCATCTTGACCTCCTGGGTGAAACGCTCGACGAGGTTTTCATTGACGA 70976 Query 93495 TACCATCGGATGCTGCaaaaaaaGCCAA 93522 | |||||||| || ||||| |||||||| Sbjct 70975 TTCCATCGGAGGCGGCAAAGAAAGCCAA 70948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556840864383360