Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2252 122 7e-23 seq2162 109 5e-19 >seq2252 Length=1130325 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| ||||| || || |||| || || || ||| || | Sbjct 563738 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 563679 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| ||||| || || || Sbjct 563678 GACACCATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 563619 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | |||||| |||||| | ||||| |||||| Sbjct 563618 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 563559 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| || | ||| | ||| | || | ||||| || Sbjct 563558 ATCCAGAAGGAATCTACGCTCCATCTGGTTCTCCGCCTTCGCGGTGG 563512 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||||| ||||| || || ||||||||||||| || | Sbjct 562929 ATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTTGAGGGTTCG 562870 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||| |||||||| || ||||| || || || ||||| Sbjct 562869 GACACCATTGAAAACGTCAAGGCAAAGATTCAAGATAAAGAGGGAATCCCCCCAGATCAG 562810 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || ||| | |||||| | ||| | ||||| |||||| Sbjct 562809 CAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACCCTGTCCGACTACAAC 562750 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||| || | ||| | ||| | || | ||||| || Sbjct 562749 ATCCAGAAAGAATCTACGCTCCATCTGGTTCTCCGCCTTCGCGGTGG 562703 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || || ||| || | Sbjct 563966 ATGCAAATCTTCGTCAAGACCCTCACGGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 563907 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || ||||||||||| ||||| |||||||| Sbjct 563906 GACACTATCGAAAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 563847 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | |||||| |||||| || ||| |||||| Sbjct 563846 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCAGCGACTACAAC 563787 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||| | ||| |||| | || | || |||||| Sbjct 563786 ATCCAGAAGGAATCGACCCTTCATCTAGTCCTCCGCCTCCGTGGAGGT 563739 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || |||| || || || ||| || | Sbjct 563157 ATGCAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACCCTCGAGGTCGAAGCCTCT 563098 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| ||||| || || || Sbjct 563097 GACACCATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 563038 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || ||||| || ||| ||||||| || || |||||| Sbjct 563037 CAGCGCTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCAGTGACTACAAC 562978 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||||||| Sbjct 562977 ATCCAGAAGGAATCCACC 562960 >seq2162 Length=74254 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || ||| | || || |||||| |||||||||| || || | Sbjct 49098 GATGCAGATCTTTGTCAAGACTCTGACAGGCAAAACGATCACTCTTGAGGTCGAGGGTTC 49157 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | | ||| || || ||||||||||| || ||||| ||||| || Sbjct 49158 TGACACCATTGAAAACGTGAAAGCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGACCA 49217 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || || ||||| ||||| ||||| || ||| |||||| | || ||||| Sbjct 49218 GCAGCGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTACAA 49277 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || ||||| | || | ||| | ||| | || ||||| Sbjct 49278 CATCCAGAAGGAGTCCACTCTCCACCTTGTTCTCCGACTTCGAGGAGG 49325 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| || || || || || ||||||| || || ||| | Sbjct 48643 ATGCAGATCTTCGTGAAAACGTTGACAGGAAAGACCATCACTCTCGAGGTTGAAGGATCT 48702 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| || ||||||||||| || || ||||| || |||||| Sbjct 48703 GACTCCATCGAGAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATTCCCCCAGATCAA 48762 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || ||||| || || | |||||| ||||||| | ||| || ||| Sbjct 48763 CAACGTCTTATCTTCGCCGGAAAGCAACTGGAGGATGGCCGCACCTTGAGCGACTATAAC 48822 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 48823 ATCCAGAAGGAGTCCAC 48839 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| || ||||| || || ||||||| || || ||| || Sbjct 49458 ATGCAGATCTTCGTGAAAACGTTGACCGGAAAGACCATCACTCTCGAGGTTGAAGGATCC 49517 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || || || |||||||| || ||||| || |||||| Sbjct 49518 GATTCGATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAA 49577 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || ||||| || ||||| || ||| |||||| | || |||||| Sbjct 49578 CAACGTCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTACAAC 49637 Query 22399 ATTCAAAAAGAATCC 22413 || || || || ||| Sbjct 49638 ATCCAGAAGGAGTCC 49652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713349394160