Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2162 107 2e-18 seq1739 107 2e-18 seq2252 102 7e-17 seq330 91.5 1e-13 >seq2162 Length=74254 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || || | ||| ||||| ||||| ||||| || || |||| ||| || ||| ||| Sbjct 49079 ACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTGCGGCCATCCTCA 49020 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 ||||| || ||||| |||| | ||||| || || || || || ||||||||||| | Sbjct 49019 AGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGA 48960 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| ||| | | ||| | | || | | ||||| |||| || | ||||||| Sbjct 48959 ATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAATGTGATCGTTTTG 48900 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || || ||||||||||| Sbjct 48899 CCCGTGAGGGTCTTCACGAAAATCTGCAT 48871 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||| || ||||||| || || ||| || ||||| || || Sbjct 48839 GTGGACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATCCTCCAGTTGCTTTCCG 48780 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| ||||| ||||| || || ||||| ||||||||||| |||||| ||| Sbjct 48779 GCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTCTTGAATCTTAGCTTTC 48720 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | || ||| | ||| || || | || | || || || |||| ||| Sbjct 48719 ACGTTCTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGGTCTTTCCTGTCAACGTT 48660 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 48659 TTCACGAAGATCTGCAT 48643 >seq1739 Length=92152 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||| || |||| || ||||||||||| |||||||||||||||||||| |||||| Sbjct 76496 TTACCGGCAAAGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTC 76437 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||||| ||||| ||| |||||| |||| ||| | || |||||||| Sbjct 76436 GCCTTGACGTTTTCAATTGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTG 76377 Query 114360 AGAGTTTTTACAAAAATCTGCATG 114383 || || || || || ||||||||| Sbjct 76376 AGCGTCTTCACGAAGATCTGCATG 76353 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||||||| | || |||||||||||||| ||||| || ||||| ||||| ||||| Sbjct 75395 TTACCAGCGAAAATCAGACGCTGTTGGTCTGGAGGGATCCCTTCCTTGTCCTGGATCTTG 75336 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||| | ||||||| ||| ||||| |||| ||| | || || || || Sbjct 75335 GCCTTGACGTTTTCGATGGTGTCGCTGGCCTCGACCTCCAGGGTGATGGTCTTCCCCGTA 75276 Query 114360 AGAGTTTTTACAAAAATCTGCATG 114383 || ||||| || || || |||||| Sbjct 75275 AGGGTTTTGACGAAGATTTGCATG 75252 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||| || ||||||| || || || || ||||| |||||||| ||||| ||||| Sbjct 76770 TTACCGGCAAAGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76711 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | || | |||||| ||| |||||| |||| ||| | || |||||||| Sbjct 76710 GCCTTGACATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTG 76651 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || ||||||||||| Sbjct 76650 AGAGTCTTGACGAAAATCTGCAT 76628 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||| ||| |||| || ||||| ||||| || ||||| || || ||||| ||||| Sbjct 77046 TTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 76987 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | || | ||||||| | | ||||| |||| || | ||| ||||||||| Sbjct 76986 GCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTC 76927 Query 114360 AGAGTTTTTACAAAAATCTGCATGGCT 114386 || || || ||||| ||||||||| || Sbjct 76926 AGCGTCTTGACAAAGATCTGCATGCCT 76900 >seq2252 Length=1130325 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | |||| ||| | || ||||| || || |||||||| ||| Sbjct 563737 ATACCTCCACGGAGGCGGAGGACTAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCG 563796 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || ||| ||| || || || || || ||| |||| || ||||| || || ||| Sbjct 563797 CTGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGA 563856 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | ||| | ||||| | || |||| Sbjct 563857 GGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTTTCGATAGTGTCAGAGGCTTCG 563916 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || || || || || || || || || |||||| Sbjct 563917 ACCTCGAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATTTGCATG 563967 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | |||||||||||| || |||||||| ||| || || | ||| || Sbjct 562720 AACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATCCTC 562779 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || ||| |||| | ||||| || || || || || || ||||| || Sbjct 562780 GAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTATCTTG 562839 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||||| || | | ||||| |||||| | || || || | || | || || Sbjct 562840 AATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATGGTCTT 562899 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||| ||| || || ||||| ||||| Sbjct 562900 TCCGGTCAAAGTCTTCACGAAAATTTGCAT 562929 >seq330 Length=146906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 114200 AATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACG 114259 ||| |||||| || ||| ||| | ||| | | ||||| ||||||||||||||||| Sbjct 108681 AATCTTGTAAGCGTACATGGTATTATCATCATTCATCTGTTTCCCAGCGTAGATGAGACG 108740 Query 114260 CTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGT 114319 |||||| |||||||||| ||||| || || ||||||| | || || | ||||| Sbjct 108741 CTGTTGAGCCGGAGGAATTCCTTCCTTTTCCTCAATCTTCTCCTTGAGTCGAGAAACGGG 108800 Query 114320 GTCGGTGGATTCGACGTCCACGGTC-ACCGTTTTGCCGGTCAGAGTTTTTAC 114370 ||| | || |||||||||| | || || |||||||| || || || || Sbjct 108801 CTCGTTAGACTCGACGTCCA-GCTCGACTTCCTTGCCGGTGAGGGTCTTCAC 108851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420119735208768