Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1889 293 4e-74 seq4 206 5e-48 >seq1889 Length=309471 Score = 293 bits (324), Expect = 4e-74 Identities = 877/1341 (65%), Gaps = 83/1341 (6%) Strand=Plus/Plus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA 243932 || ||| |||||||| |||||| | | ||| |||| || || || ||||| |||| Sbjct 13787 GATGTTCAGGGACTGCGACTGGTCTATGTAGG-CGCCGCGGTCGGCCGCCATCTCCATGA 13845 Query 243933 GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG-AGGTGCTCGGGGAAC 243991 |||||||||||| ||||| | |||||||||| | | |||| || | || ||| | Sbjct 13846 TGTCCTTCTGAGAGATCTCCCAGACCGTCTTGTACAAGT-CTTGCAGATCCTTGGGAATG 13904 Query 243992 CCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTC 244051 | ||||| ||| | || || | |||||| || | | | || |||| | Sbjct 13905 TCGGCGATGCCCTGGATGGATCCACCCTTCGCGATGATCTCGTTCTTGAGTTTGTCGTCC 13964 Query 244052 CACAGGCCCAAGCGCT-CCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCC 244110 |||||| || || | ||| ||| || || ||| ||| || | ||| || || || Sbjct 13965 CACAGGTTCA-GCTCAACCAAGTCCTTGAGCAAGTGAGGGTTGACGATCTGGAAGTCGCC 14023 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170 || || || || || ||||| |||| | || ||||||||| ||| |||| || Sbjct 14024 GGAAAGGACACGACGGCTGTAGATGTTGGAGGTGTACGGCTCGATCGACTCGTTGTTTCC 14083 Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCC 244230 || || || || ||| ||| || ||||| || | ||||| || ||||| | || || Sbjct 14084 GAGGATTTGAGCAGTGGACGCCGTGGGCATCGGAGCAACCAGAAGGCTGTTGCGGACTCC 14143 Query 244231 GTGCCTCTGGATG--CGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCG 244288 |||| | ||| | || || | | |||||| ||| | ||| | | || || Sbjct 14144 GTGCTTGGCGATCTTCTCCTTCAAAG-TAGC-CCAGTCGCACTGGTCCGTGGGAACCACG 14201 Query 244289 CGTTTGAGGCCC---------CACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTG 244339 | ||| | || ||||| || | || |||| || |||||| || | Sbjct 14202 GGCTTGCCGTCCTCGGTGGTCCACATCTCGTATTGGAGCACGCCGCGGCTGACCGGAGAG 14261 Query 244340 CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCG 244399 || |||||||| ||||| |||| ||| ||||||| ||| ||||||| | Sbjct 14262 CCTTCGTAGGTTTCATAGGGTCCGTACAGCTCCGCCAGCTCGCAGGAAGACTCGAGGGAG 14321 Query 244400 GCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAG 244459 |||| ||||||||| |||||||| |||||||||||||||||| | | ||||||| Sbjct 14322 GCGTGGTAGATGGTTTCGAAGATTCGCTTGTTCATGTCGCGGGCTTCAGGACTGGTGAAG 14381 Query 244460 GGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTG 244519 |||| || ||||| ||| ||| |||| || |||||||| || ||||| || ||||| | | Sbjct 14382 GGGAAGCGCATCAGCATAAAGGCGTCCGCGAGTCCCTGGACTCCGATTCCAATGGGACGG 14441 Query 244520 TGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTG 244579 || |||||||||||| |||||| || || || ||| ||||||||||||| | |||| Sbjct 14442 TGCCGCTTGTTGGAGGTTTCGGCTTCAGGAACAGGATAATAGTTGCCGTCGATGATCTTG 14501 Query 244580 TTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAG 244639 ||||||||||| |||| | || ||| | | |||| ||||| ||| || Sbjct 14502 TTGAGGTTGCGAGTGACGACCTTAGTGA--TCG-CGTGGAGCTTC---TCGTAGTCGAAG 14555 Query 244640 GGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCA 244698 | || | || |||| || || ||| | || | || | |||||| Sbjct 14556 G-----TC-----TTGTCCTCCTTGACGAATCGGTTCAACGCAATCGAAGCTAAGTTGCA 14605 Query 244699 GACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTT 244758 ||||| || || || | | ||||||||| ||||| ||||| ||||| |||||| Sbjct 14606 CACGGCGACTTCGTCGGGAGACGAGTACTGGACGATCTCAGTGCACAGGTTGGAGCACTT 14665 Query 244759 GATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAA 244818 ||| || ||||||| ||| || || |||||| ||||||||||||||||||||||||| | Sbjct 14666 GATCGTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTA 14725 Query 244819 GGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCC-AGAGGTCCCTAGCCTTGA 244877 || || || |||| ||||| | || || || |||| |||| | | ||||||| Sbjct 14726 AGGAGTTCCAGTTTCGATCTGGGAGGTGACGAT-CTCTTCCCAGAGTGCACGGGCCTTGA 14784 Query 244878 C-----------------CGTCCTGCGAG--CCTT------GCCC-----TCT----GCC 244903 | | |||||| | |||| ||| ||| ||| Sbjct 14785 CACGCTTCTTAAAACGTCCTTCCTGCTCGTACCTTAAATAAGCCGATAATTCTAGAAGCC 14844 Query 244904 TCG-----------TAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTA 244952 | || ||||||| || ||||||||| ||| | || | Sbjct 14845 ATGAAAGAAATACTTACTGGGTGTAGAGCTTCTCGAACTCTTTGCCGTAAGTGTCAGGGA 14904 Query 244953 GGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCA 245012 | ||||| ||| |||||||| | | |||||| | | |||||||| | | || Sbjct 14905 GTCCGGGACACTTATGAGGGCACATCAAAGACCACTCTTTGTCCTCCTTGACACGTTCCA 14964 Query 245013 TGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGC 245072 |||||||||| |||||||| ||| | | ||||||||| | || | || || || || | Sbjct 14965 TGAAGAGGTCAGGGATCCACAGGCCGTAGAAGAGGTCGCGGGCGCGCTCTTCTTCGGATC 15024 Query 245073 CAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGA 245132 ||||||| | | || || || || || | |||| ||||||| ||||| | ||||| Sbjct 15025 CAGTGTTTCGCTTGAGGCGCAGGAACTCGAAAATGTCGGCGTGCCATGGCTCGACGTAGA 15084 Query 245133 CAGCGAGGGCGCCGGGCCGCT 245153 || | || ||||| |||| Sbjct 15085 TGGCAAACGCTCCGGGGCGCT 15105 >seq4 Length=195412 Score = 206 bits (228), Expect = 5e-48 Identities = 417/610 (68%), Gaps = 9/610 (1%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| ||||| |||||||| || || || |||||||| ||||| | | | |||| Sbjct 70949 TGGCTTTCTTTGCCGCCTCCGATGGAATCGTCAATGAAAACCTCGTCGAGCGTTTCACCC 71008 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 | ||||| || || || | ||||||| |||||||||| ||| | || | Sbjct 71009 AGGAGGTCAAGATGCCAGAAGCCTTGTCCTTCTACAGCTTCCAGATGGCCGTCGAAGGCA 71068 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| ||| ||||| |||| || | | | ||| || | ||||| ||||| | Sbjct 71069 TCCACTCGGAGATGTACTCCAAGATGATTGAAGCTTACGTCGTCGATCCAAAGGAGCGCA 71128 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 ||| || ||||| ||||| | | | || |||||||||||||||||||||||||| | Sbjct 71129 ACGTTCTTTTCAACGCCATCCACGAGTTCCCTTGCATCAAGAAGAAGGCGGACTGGGCTC 71188 Query 42664 TCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 | |||||||| | | | || ||| | || || | | | || || ||||| Sbjct 71189 TGCGCTGGATCG-GCGACAAGAACGCTTCATTTGGAACTCGCGTTATCGCGTTCGCCGCC 71247 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGT 42781 || || || ||||||||||| || | ||||| ||||||| ||||||||| || ||| Sbjct 71248 GTTGAAGGAATCTTCTTCTCTGGGTCGTTCGCTGCCATCTTTTGGCTCAAGAAGCGAGGC 71307 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| |||||||| | |||||||| || | | || || || || || | Sbjct 71308 CTC-ATGCCTGGACTCACTCACAGCAACGAACTGATTTCCCGCGATGAAGGCCTTCACCG 71366 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||| ||| | | |||| | | ||||| || | ||| ||| Sbjct 71367 TGACTTTGCCTGCCTCATGTAC---AAGTACCTGGAGGAGAAGCCTTCCCCGAAGCAGGT 71423 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | || || ||| || || ||| |||||||| |||||| ||| || | | || || Sbjct 71424 CAAGGAAATTATCGATGAAGCTGTGAAGATCGAGCAGGAGTACCTTACCGAAGCTCTTCC 71483 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA-AGTACATCCAGTACGTCGCCG 43020 ||| | || |||| ||||||| || |||||| ||| || || ||| |||||| | Sbjct 71484 AGTGGACATGATCGGGATGAACCGGGATCTCATG-GCACTTTATATTGAGTTCGTCGCTG 71542 Query 43021 ACCATCTCCT 43030 ||||||| || Sbjct 71543 ACCATCTGCT 71552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944305392656640