Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq2606 208 2e-49 seq2689 80.6 7e-11 >seq2606 Length=3143 Score = 208 bits (230), Expect = 2e-49 Identities = 374/546 (68%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 19489 GGCTTGCGCGCCAAGATCGACAACGACACCGGCTGGCACAAGACGCTTTCCAACGTGGCG 19548 |||||||| ||||| |||||| | || |||||||||||||| || || ||||| |||| Sbjct 824 GGCTTGCGTGCCAAAATCGACGAAGAAACCGGCTGGCACAAAACCCTATCCAATGTGGGT 883 Query 19549 GTGGGCGGCGTGACCGGTCTGTCGCGCGACGTGTTCTGGGACCTTCAGGACCCGGCGACC 19608 || |||||| || ||||| || || || |||||||| || || | | | || Sbjct 884 GTTAACGGCGTAACGGGTCTATCTGCTGATGTCTTCTGGGATCTGCAAGCGACTGGAACT 943 Query 19609 GACGCGGGCTACCTGAACGCCAACGAGGTGACCACGCTGGTTCACCGCGACGGCTACCGC 19668 || || | |||||| || | | || || ||| | | | |||| | || Sbjct 944 GAGGCTGATCTGCTGAACCAGAATCACATCACAACACTGATCCGCAAAAACGGTTTTCGT 1003 Query 19669 TTCTGGGGCTCGCGCACGTGCAGTGC------------GGATCCGCTGTTCGCCTTCGAG 19716 |||||||| || ||||| ||| || ||| | |||||| | ||||| Sbjct 1004 TTCTGGGGTTCACGCACTTGCGCTGGCTCTGCTTCTGAGGACTCACTGTTCCCATTCGAA 1063 Query 19717 AACTACACCCGCACCGCGCAGGTGCTGGCCGACACCATGGCGGAAGCACACATGTGGGCG 19776 | ||||||||| ||||| ||||| ||||| ||||||||||| || || || |||||||| Sbjct 1064 AGCTACACCCGTACCGCTCAGGTACTGGCTGACACCATGGCTGACGCGCATATGTGGGCA 1123 Query 19777 AACGACCTACCGATGACGCCCACCCTCGTGCGCGATCTGCTGGAGGGCATCAATGCCAAG 19836 | |||| |||| |||| || | || || ||||| | | || ||||||||||| ||| Sbjct 1124 ATCGACAAACCGCTGACCCCATCGCTGGTACGCGACATTATCGAAGGCATCAATGCTAAG 1183 Query 19837 TTGCGCATGCTGACCCGCAACGGATACCTGCTGGGCGG-CGCCGCGTGGTTCGACGCGGA 19895 || || |||| ||| ||| | | | ||| || || |||| |||| | Sbjct 1184 TTCCGTGAACTGAAAGCGGGCGGCTACATCATTGACGGTCGTTGC-TGGTATGACGACAA 1242 Query 19896 CGCCAACAGCAAGGACACGCTGAAGGCCGGGCAACTCGCCATCGACTACGACTACACGCC 19955 |||| || ||||| ||||| || || |||| ||||||| |||||||| || || Sbjct 1243 AATCAACGATAAAGACACCCTGAAAGCAGGCAAACTGACCATCGATTACGACTATACCCC 1302 Query 19956 CGTCCCACCTCTGGAGAACCTCACGTTCCGCCAGCGCATCACCGACCGCTACCTGATGCA 20015 || || || ||||| ||| | | ||| ||||||||||| || || | ||||||||| | Sbjct 1303 TGTACCGCCACTGGAAAACATGATGTTACGCCAGCGCATTACAGATAGTTACCTGATGGA 1362 Query 20016 GTTCGC 20021 ||||| Sbjct 1363 TTTCGC 1368 >seq2689 Length=1181 Score = 80.6 bits (88), Expect = 7e-11 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 16096 CCAGTTCATTGCCGAGCTGGTGATTCCCGAGACCGTGGGTGGCTGGTGGGTTCGTGAGCT 16155 |||| | |||||||||| ||| || || ||| | || || |||||| | || || | Sbjct 633 CCAGATTATTGCCGAGCAGGTCATCCCGGAGCATGACGGCGGGTGGTGGATACGGGAAAT 574 Query 16156 GGGCCTCATCGACGCGGACGGCACGCTTGCTTACTA-CGGCAACTGCCCCGAGACGTACA 16214 ||||| | || |||||| ||| | | | || ||||||| | || || |||| Sbjct 573 CGGCCTGTTTGATAAAGACGGCGTGCT-GATGGCGGTCGCCAACTGCGCTGAAACCTACA 515 Query 16215 AGCCGCAGATGGCCGAAGGCTCCGGCCGCACGCAGGTTGTGCGCATGGTCGTG-CTGTCG 16273 | |||||| || ||||||||||||||||| ||| | | || ||||| || |||| Sbjct 514 AACCGCAGTTGCAGGAAGGCTCCGGCCGCACCCAGACTATCCGTATGGTACTGATTGTCA 455 Query 16274 GCCTCGGGCGCCGCTGTCGAGCTGAAGATCGATCCGGCGATCGTGCTGGCGACGCGCCAA 16333 ||| | | || || |||||| || || ||| || | ||||||||||| || || Sbjct 454 GCCACACG-AATGCGGTGACGCTGAAAATTGACCCGTCGGTGGTGCTGGCGACACGGGAA 396 Query 16334 TA 16335 || Sbjct 395 TA 394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123906185807296