Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq2599 107 4e-19 seq2766 104 5e-18 seq2600 98.7 2e-16 >seq2599 Length=15424 Score = 107 bits (118), Expect = 4e-19 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 22445 TGCGCCGCCCGTTCAGCGTCACCAAAGAGGTGCCCTTTACCGATGTCTGGACCTACCCCT 22504 |||||||||||||| || || ||| ||||| | |||||| |||||| | | Sbjct 13331 TGCGCCGCCCGTTCTCAGTGACGGCAGACGTGCCTTATACCGACGTCTGGCAATTTGCAC 13390 Query 22505 CGGTGCAGGCTTACCCGGGCAAGCACCCTTGCGAAAAGCCCGCTGCCATGATGGAGCACA 22564 | || ||| ||| |||||||||||||| ||||||||||| |||| | ||||| || | Sbjct 13391 CCGTTCAGTATTATCCGGGCAAGCACCCCTGCGAAAAGCCTGCTGACCTGATGACACATA 13450 Query 22565 TCGTGCGCACCAGCAGCCGGCCAGGTGATGTTGTTGGAGACTTCTTTATGGGGTCTGGTG 22624 | | | ||||||||||| ||| ||||| || | || ||||||||||| || || | Sbjct 13451 TTATCCAGTCCAGCAGCCGGGAAGGGGATGTGGTGGCGGATTTCTTTATGGGTTCCGGGG 13510 Query 22625 CCAC 22628 | || Sbjct 13511 CAAC 13514 >seq2766 Length=35022 Score = 104 bits (114), Expect = 5e-18 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 22471 GAGGTGCCCTTTACCGATGTCTGGACCTACCCCTCGGTGCAGGCTTACCCGGGCAAGCAC 22530 || || || | ||||||||| |||| || | || || || |||||| |||||||| Sbjct 29377 GATGTTCCTTATACCGATGTTTGGAATTATTCATCTGTACAATATTACCCAGGCAAGCAT 29318 Query 22531 CCTTGCGAAAAGCCCGCTGCCATGATGGAGCACATCGTGCGCACCAGCAGCCGGCCAGGT 22590 || || |||||||| |||| |||||||| ||||| | | ||| ||||| ||| Sbjct 29317 CCATGTGAAAAGCCTGCTGAGATGATGGAACACATTATCAATAGCAGTAGCCGAGAGGGT 29258 Query 22591 GATGTTGTTGGAGACTTCTTTATGGGGTCTGGTGCCACCGGAAAAGCAGC 22640 |||||||||| || ||||||||||| ||||| || || |||||| || Sbjct 29257 GATGTTGTTGCTGATTTCTTTATGGGATCTGGGGCAACAATAAAAGCGGC 29208 >seq2600 Length=29343 Score = 98.7 bits (108), Expect = 2e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 20186 GCCACCCTGCAGACCCTGGAGGCCAACCGCTATTCGGTGCCGATGTGGTACCCGGACTAT 20245 |||||| ||||| | |||| ||| ||| || |||||||||||||| |||||| Sbjct 13430 GCCACCTTGCAGGCGTTGGAAAAACTCCGTTATAGCGTACCGATGTGGTACCCCGACTAT 13371 Query 20246 GACGGGATCTACTGGGCCGATGGCCGCACCCTGGACGCCGAGGGCGGCGACTACCAGGTG 20305 ||||| || || ||| | ||||| |||||| | || | ||||| || || | || | | Sbjct 13370 GACGGTATGTATTGGTCTGATGGTCGCACCTTAGATGTTGAGGGTGGTGATTTTCAAGCG 13311 Query 20306 ATCGAGAACCTGCGCATTGCCTACAAGGTGGCGCGCCGGATGCGCCTGC 20354 || || ||||||||||||| | | || || ||||| || | ||| ||| Sbjct 13310 ATTGAAAACCTGCGCATTGTCGATAAAGTCGCGCGTCGCGTTCGCTTGC 13262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108626705480096