Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2252 163 7e-35 seq2162 140 8e-28 seq1739 105 2e-17 seq1859 100 7e-16 seq2318 89.7 1e-12 >seq2252 Length=1130325 Score = 163 bits (180), Expect = 7e-35 Identities = 177/231 (77%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| |||||||||| || ||| || ||||| || ||||||| Sbjct 563159 CCACCACGGAGACGAAGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 563218 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| || || ||||| |||||||||| ||||| || |||||| Sbjct 563219 AAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGG---TCTGGG 563275 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTC 288422 |||||||||||||| ||||| || || ||||||||||| |||| ||| | || || Sbjct 563276 GGAATTCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATAGTATCAGATC-CCTC 563334 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||||| |||||| ||||| || ||||| Sbjct 563335 GACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || ||||||| || ||| || ||||| || |||||| | Sbjct 563740 CCTCCACGGAGGCGGAGGACTAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTG 563799 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| ||||||||||| ||||| ||| || Sbjct 563800 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGA 563859 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || |||||||| |||| || | ||| || Sbjct 563860 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTTTCGATAGTGTCAGAGGCTTCGACC 563919 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||||||||| || ||||| Sbjct 563920 TCGAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATTTGCAT 563966 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | || || ||||| | ||| ||| || ||||| || ||||||| Sbjct 563511 TCCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGA 563570 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || || || | || ||||| ||||||||||| ||||| || ||||| Sbjct 563571 CAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTG---GTCTGG 563627 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||| || || || ||||| || || || ||||| || || | || | ||| Sbjct 563628 GGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTC 563687 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||||| |||||| ||||| || ||||| Sbjct 563688 GACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 127 bits (140), Expect = 5e-24 Identities = 170/234 (73%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| |||| ||| ||| || ||||| || ||||||| Sbjct 562200 CCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 562259 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | ||||| || || || | || ||||| ||||||||||| ||||| || ||| Sbjct 562260 AAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTG---GTCTGGG 562316 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---T 288420 ||||| || || ||||||||||| || || || ||||| || || | || ||| Sbjct 562317 GGGATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTC---CGAACCC 562373 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || ||||| ||||| ||||||| ||| || ||||| ||||||||| Sbjct 562374 TCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTTTTCACGAAGATCTGCATT 562427 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || || ||||| ||||| || || |||||| ||||||||||| |||||||| Sbjct 562559 TTACCGGCAAAGATGAGACGTTGCTGG---TCTGGGGGAATTCCTTCTTTGTCCTGGATC 562615 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| || || || | ||| ||| || ||||| ||||| ||||| || Sbjct 562616 TTGGCCTTCACATTCTCGATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCA 562675 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||||||||| || |||||| Sbjct 562676 GTGAGGGTCTTGACGAAGATTTGCATT 562702 >seq2162 Length=74254 Score = 140 bits (154), Expect = 8e-28 Identities = 173/233 (74%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | ||| || || || | ||| || || ||||| ||||||||| Sbjct 48870 TCCTCCTCGGAGGCGAAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCT 48811 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || || || | ||| ||||| |||||||| ||||| |||||| ||||| Sbjct 48810 CAAGGTGCGGCCATCCTCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGA---TCTGG 48754 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATT 288421 | ||||||||||| || || || || ||||||||||| || || || || | || || Sbjct 48753 GGGAATTCCTTCTTTGTCTTGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATC-CTT 48695 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || ||||| ||||| ||||| || |||| || || ||||| ||||||||| Sbjct 48694 CAACCTCGAGAGTGATGGTCTTTCCTGTCAACGTTTTCACGAAGATCTGCATT 48642 Score = 120 bits (132), Expect = 7e-22 Identities = 154/210 (73%), Gaps = 12/210 (6%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| |||||||| |||||||| | ||||| || || || | ||| Sbjct 49073 TGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTGCGGCCATCCTCAAGTTGC 49014 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || || ||||||| ||||| ||| |||||| ||||||||||| || || || Sbjct 49013 TTCCCAGCAAAGATCAATCGCTGCTGA---TCTGGGGGGATTCCTTCTTTGTCTTGAATC 48957 Query 288388 TTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || ||||| |||||||| || ||||| || | || ||||| | |||||||| || Sbjct 48956 TTAGCTTTGACGTTTTCGATCGAATCAGAGCCC---TCGACTTCCAATGTGATCGTTTTG 48900 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| ||||||||| Sbjct 48899 CCCGTGAGGGTCTTCACGAAAATCTGCATT 48870 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| || || |||| ||| ||| || ||||| || |||||| Sbjct 48642 TCCTCCCCGAAGGCGAAGAACTAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGCT 48583 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || ||||| | || ||||| |||||||| || | ||| || | || Sbjct 48582 CAAAGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCAGGAGG 48523 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || |||||||| ||||| |||||||| || || || || || || Sbjct 48522 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGAGTCTGAACCCTCAAC 48463 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| || || || ||||| ||||| || ||||| Sbjct 48462 CTCAAGGGTGATCGTCTTGCCCGTAAGCGTCTTCACGAAGATTTGCAT 48415 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || |||| || || || || | ||| || || ||||| || ||||| Sbjct 49326 TCCTCCTCGAAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACT 49267 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || ||||| || || || || || |||||||| ||||| || || Sbjct 49266 CAAAGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGG 49207 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || || ||||| || |||||||||||||| || | || || || Sbjct 49206 AATTCCTTCCTTGTCTTGGATCTTAGCTTTCACGTTTTCAATGGTGTCAGAACCCTCGAC 49147 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || || |||||||||||||| || |||||||| Sbjct 49146 CTCAAGAGTGATCGTTTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 49099 >seq1739 Length=92152 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||||||||| ||||| || ||| ||||| || || |||||||| || Sbjct 77046 TTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 76987 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | ||||| | || || || || ||||||||||| |||||| Sbjct 76986 GCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTC 76927 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || |||||||| || |||||||| Sbjct 76926 AGCGTCTTGACAAAGATCTGCAT 76904 Score = 102 bits (112), Expect = 2e-16 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387 || || ||||| |||||||||||||| ||| ||||| ||||| || |||||||| Sbjct 75395 TTACCAGCGAAAATCAGACGCTGTTG---GTCTGGAGGGATCCCTTCCTTGTCCTGGATC 75339 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || |||||||| || | ||||| | || || || || ||||| |||||||| Sbjct 75338 TTGGCCTTGACGTTTTCGATGGTGTCGCTGGCCTCGACCTCCAGGGTGATGGTCTTCCCC 75279 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| || ||||| Sbjct 75278 GTAAGGGTTTTGACGAAGATTTGCAT 75253 Score = 102 bits (112), Expect = 2e-16 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 || || || ||||||||||| || || ||||| ||| ||||| || ||||||||| Sbjct 75946 TTACCGGCAAAGATCAGACGTTGCTGG---TCTGGAGGGATGCCTTCCTTGTCCTGGATT 75890 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || ||||| || || | ||||| | || || || || ||||||||||| ||| Sbjct 75889 TTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCGACCTCCAGAGTGATCGTCTTGCCG 75830 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| Sbjct 75829 GTGAGCGTCTTCACGAAGATCTGCAT 75804 Score = 102 bits (112), Expect = 2e-16 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 || || || ||||| || || || ||| ||||| ||| ||||| || |||||||| Sbjct 76770 TTACCGGCAAAGATGAGGCGTTGCTGA---TCTGGAGGGATGCCTTCCTTGTCCTGGATC 76714 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| || || || || || | ||||| | ||| || || || ||||| ||||| ||| Sbjct 76713 TTCGCCTTGACATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCG 76654 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| |||||||| Sbjct 76653 GTGAGAGTCTTGACGAAAATCTGCAT 76628 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 || || || |||||||||||||| || ||||| ||| ||||| || || || || Sbjct 75670 TTACCGGCAAAGATCAGACGCTGCTGG---TCTGGAGGGATGCCTTCCTTGTCTTGAATC 75614 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || || || || | ||||| | ||| || || || ||||| ||||| || Sbjct 75613 TTGGCCTTGACATTCTCGATTGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCA 75554 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| |||||||| Sbjct 75553 GTCAGCGTCTTGACGAAGATCTGCAT 75528 >seq1859 Length=77309 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || ||||||||||| || ||||| || | ||||||||||| || || || || || Sbjct 72680 TTACCTGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCTTGAATCTTG 72621 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || |||||||| || || | ||| | ||| || |||||||||||||| || || || Sbjct 72620 GCCTTCACGTTCTCGATCGTGTCGGAGGCTTCGACCTCGAGCGTGATCGTTTTACCCGTG 72561 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| |||||||| Sbjct 72560 AGGGTTTTGACGAAGATCTGCAT 72538 >seq2318 Length=474513 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || || |||||||| ||||| || |||||| ||||| || ||||||||||| Sbjct 465022 TTACCGGCAAAGATCAGGCGCTGCTGG---TCTGGGGGGATTCCCTCCTTATCCTGGATC 464966 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || || || || | || | || || ||||| ||||| || || ||| Sbjct 464965 TTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCGACCTCGAGGGTGATGGTTTTGCCG 464906 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||||||||| |||||||| Sbjct 464905 GTCAAAGTCTTGACGAAAATCTGCAT 464880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179611112581792