Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq2664 273 9e-69 seq2629 149 3e-31 seq2774 89.7 2e-13 >seq2664 Length=5510 Score = 273 bits (302), Expect = 9e-69 Identities = 476/683 (70%), Gaps = 16/683 (2%) Strand=Plus/Minus Query 16781 TTGAGCTGAAGCCTGGTATTCTCCTTAAGCGCCTTACCCGTCAGGCGACGTGCTGCAAGA 16840 ||||||||||||| || | || ||||| || |||| |||||| | |||| | | Sbjct 1200 TTGAGCTGAAGCCGGGACAGTTACTGAAGCGGCTGACCCAGCAGGCGGCTTGCTCGGAAA 1141 Query 16841 TGCCGCCAGTGCTGGAAATTGACTCTGCATTTAAATTTTATGACGAAAGACTTTGGGTGT 16900 |||||| ||| ||||| || | |||||| | ||||| || || | || ||||| | Sbjct 1140 GGCCGCCGGTGGCAGAAATCGAGGCCGCATTTCAGTTTTACGATGATCGGCTGTGGGTTT 1081 Query 16901 TTGGCCTGACCGGAACGGCGAAAGCCGACAGGCTGATCGAAATATTCGACTACGCTCGCC 16960 |||||||||| |||||||| ||||||| || |||| || || ||| ||| || | | Sbjct 1080 TTGGCCTGACGGGAACGGCAAAAGCCGCGCGGGTGATTGAGATCTTCAGCTATGCGCAGC 1021 Query 16961 GCCGATACGGTATCCAGTTATTCATCATCGACAGCCTGATGAAATGTGGCATAGGCGACG 17020 | || |||||||| ||| | || | |||||||||||||||||||| || || || || | Sbjct 1020 GTCGTTACGGTATTCAGCTGTTTGTTATCGACAGCCTGATGAAATGCGGTATCGGGGAGG 961 Query 17021 ATGACTATAACGGGCAGAAGGCGTTTGTTGACTCGATTTGCGACTTCAAAACACAAAACA 17080 |||| || ||||||||||| || ||||| || | | || |||||||||| || || Sbjct 960 ATGATTACAACGGGCAGAAAGCCTTTGTGGATGCCCTGTGTGACTTCAAAA-ACCGTACC 902 Query 17081 AACTCCCCACGTCATTCTCGTTACTCACTCGCGAAAAGGAGACAGCGAAGAAAAACCAAC 17140 | ||| || || || || || ||| |||||||| ||||| || || ||| || Sbjct 901 CGC-AGCCATGTGATCCTGGTGACCCACAGTCGAAAAGGGGACAGTGAGGAGCGACCGAC 843 Query 17141 CGGGAAAATGGACGTAAAAGGCTCTGGAGCGATAACAGACCTGACAGACAACCTTTTCAT 17200 ||||||||||| || |||||| | || ||||| || |||||||| ||||| | | || Sbjct 842 GGGGAAAATGGATGTCAAAGGCACCGGGGCGATTACTGACCTGACCGACAATTTGATGAT 783 Query 17201 CATCTGGCGTAACAAGGCTCGCGAGAGAGCGTTACAGAGAGTTCAG---AGTGGTGAAAA 17257 |||||||| || || || || ||| | | ||| || | || ||| | || | Sbjct 782 TATCTGGCGCAATAAAGCCCGTGAGCGTGTGTTGCA-AAAG--CAGGACACCGGAGCCGG 726 Query 17258 GATGTCAGAGAAGGA---CGAACAGCTACTGGCATCTCCGGCATCTGTTTTGATGCTTGA 17314 | | | || ||||| ||| | |||||| |||||| | | || || |||| Sbjct 725 GTTAACGGAAAAGGAACGGGAAAA---ACTGGCCGATCCGGCGGCCATGGTGTTGATTGA 669 Query 17315 AAAACAACGTAACGGCGAAGGTTGGGAAGGTGGTGTCCCGTTGTTCCTTGACGAGCAATC 17374 ||||| || |||||| | || ||||| || ||| || | ||| || ||| | |||| Sbjct 668 GAAACAGCGGAACGGCAACGGCTGGGAGGGCGGTATCGGGCTGTATCTGGACAAAAAATC 609 Query 17375 GCACCAGTTCCTGCAACTTGAATCAGGAT-CGCCATATAGCTACATCGCCAATATGCCGA 17433 || ||||| ||| | ||| | || | || ||| ||| || |||||||||||| Sbjct 608 CCATCAGTTTTTGCCGCAGGAA-CGGGCTGATCCCTATCACTATATTGCCAATATGCCGG 550 Query 17434 AATCGGAATATGACGAGGCGTGG 17456 || || |||||||| | |||| Sbjct 549 CCTCTGAGTATGACGAAGTGTGG 527 Score = 253 bits (280), Expect = 8e-63 Identities = 715/1076 (66%), Gaps = 38/1076 (4%) Strand=Plus/Minus Query 14633 ACCTGTTGCCAAACGGCAAGAAAGAGGGGCATGAGTGGGTTGCCGGTAACGTCAACGGTG 14692 ||||| |||| |||| || | |||||||||||||||| ||| |||||||| | Sbjct 2328 ACCTGCTGCCGGACGGACGCAAGGCCGGGCATGAGTGGGTTGTCGGATCGGTCAACGGGG 2269 Query 14693 ACAAGGGAAACAGCCTTAAGGTCAACATTAGCGGCAAGAAAAAATGGGCTGATTTCGCTG 14752 | || |||||||| || | || | |||||||||| ||| | || || |||| Sbjct 2268 AAGCCGGCAACAGCCTGAAAATTAATTTGTCCGGCAAGAAAGTCTGGTCCGACTTTGCTG 2209 Query 14753 AGGGAGACGGCGGTGACATGCTTGATTTGTGGATGGCATGT-CGTGGAATTAACCTGCAT 14811 | || |||||| || || | ||||||||| || || || |||| | |||||| Sbjct 2208 AAGGCACCGGCGGGGATCTGTTGGATTTGTGGGTG-CAGGTGCGTGATTGTGGGCTGCAT 2150 Query 14812 CAGGCTATGCAGGAAGCGAAAGCATTTCTCGGTATCAAGGATGACGATCACCATTTCGAT 14871 ||||| ||| ||| || ||| ||||| || || |||||||||| |||||| | Sbjct 2149 CAGGCCATGACGGAGGCAAAACAGTTTCTGGGGATTGCCGATGACGATCGCCATTTTGCC 2090 Query 14872 GCCAAACGTGAGAAAAAA--TTCTCCAGACCTGACCGCAAGAAAATCGCCCGCTACGTTA 14929 ||||||| || |||||| || ||| | || || || | | | || |||| Sbjct 2089 GCCAAACA-GACAAAAAACTTTGTCCGG-CCAGATCGTCATAGGCTGGCAAAACACGTCT 2032 Query 14930 CCAGAACAGAATCCCATCTTGAG--TACCTG-CAATCGCGTGGCATA--TCGCCAGAAGT 14984 || | | || || | || | || ||| | | | || || || |||||||| Sbjct 2031 TCAAACCTGA--CCAGTGTTATGCCTATCTGGCTAGC-CGGGGGATCAGTCGCCAGACCG 1975 Query 14985 CGTAAAGCGCTACGAGGTTGTCAGCGGCAAGGTGTGGAATG-----GAGAAC-GAGAACT 15038 || || ||| | ||| ||| | || || ||| | || ||| | | | | Sbjct 1974 CGGAA-GCGTTT-GAGATTGGGGATGCCAGTGTCTGGTTTCCTGCTGAAAACAGGGTATT 1917 Query 15039 GGATGCTCTGGTGCTTCCGTACAAACGCGATGGTGAGTTGTTGCAGGTCAAGCGAATCAG 15098 | || | | | || |||||||| | || || |||||||||||||||| ||||| Sbjct 1916 GCCGGCCATTGCCTTCCCCTACAAACGGAACGGGGAACTGTTGCAGGTCAAGCGCATCAG 1857 Query 15099 CACTGAGCGCCCGGACGGGAAGAAAGTCATTATGGCAGAAGGTGATTGCGAACCTTGCCT 15158 || | ||| || | || || ||||| || ||||| |||| || ||||| ||||| Sbjct 1856 TACGGTGCGTCCCAAGGGTAAAAAAGTGATGATGGCGGAAGCCCGGTGTGAACCCTGCCT 1797 Query 15159 GTTCGGATGGCAGGCTCT---GGACGCTGGCGTGAG-GGCGGTTGTGCTTTGCGAAGGCG 15214 ||| || |||||||| | | |||||| | ||| || | || || || ||||| | Sbjct 1796 GTTTGGCTGGCAGGCAATACCGAACGCTGTCC-GAGTGGTGATTTTG---TGTGAAGGGG 1741 Query 15215 AAATTGATTGTATGAGCTATGCGCAATACGGCATCTCGGCGTTATCCGTGCCGTTTGGTG 15274 | || || || |||| ||| || ||||| | |||| | || |||||||| || | Sbjct 1740 AGATCGACTGCCTGAGTTATCACCAGTACGGTTTGCCGGCCCTGTCTGTGCCGTTCGGGG 1681 Query 15275 GCGGGAAAGGCGCTAAGCAACAGTGGATTGAGTTTGAGTATCACAACCTCGACAGGTTTG 15334 | || || || || || || ||||||||||||||||| || ||||| || || | |||| Sbjct 1680 GTGGTAAGGGGGCCAAACAGCAGTGGATTGAGTTTGAATACCACAATCTGGATCGCTTTG 1621 Query 15335 AGGAAATATTCATCTCGATGGACGTTGATGATGTTGGTCGTGAAGCCGCAAGGGAAATCG 15394 ||||||| | || || ||||| ||||| || || || || || || | || || | Sbjct 1620 AGGAAATTTGGATTTCCATGGATAACGATGACGTGGGGCGGGAGGCGGCCAAAGAGATTG 1561 Query 15395 TAAGCCGACTCGGTGAACATCGTTGCCGTCTTGTTACTCTGCCGTACAAAGACATCAACG 15454 ||||| | || | |||||| ||||| | || | ||||||||||| || ||||| | Sbjct 1560 CCAGCCGGTTAGGGGCACATCGCTGCCGGTTAGTCAGCCTGCCGTACAAGGATATCAATG 1501 Query 15455 AATGCCTGATGAACGGTGTTACCGAGGATGAAATCTGGCAGTACATCGGCACGGCATCCT 15514 | || | || | || |||||| | || | | | | |||||| ||| Sbjct 1500 CCGGTTTGCAGGCGGGCATGACACCGGATGAGGTGGTGCGTTGCCTTGAAACGGCAGCCT 1441 Query 15515 ATTTCGATCCTGAAGAACTCTACAGTGCGCGAGAGTTTTACCAGGACACTATCAACGCTT 15574 ||| || || ||||| | | |||||| || |||||||| |||||||| || | || | Sbjct 1440 TTTTTGACCCGGAAGAGTTGTGCAGTGCCCGCGAGTTTTATCAGGACACGATTGAGGCGT 1381 Query 15575 TCTACGGCAAGAAGCAGTATCTGTTTAATCCACCGTGGGAATCTCTGGCAGA---TAAAT 15631 ||||||| || || | ||||||| |||||||||| | ||| || || Sbjct 1380 TCTACGGTCAGGCCCACTGCCTGTTTACCACACCGTGGGA----CAGGCTGAATCCGCAT 1325 Query 15632 TCCAG-TTCCGTGAGGCCGAGTTGACGCTGGTCAATGGTGTGAACGGTCACGGAAA 15686 | ||| ||||| || | ||| ||||| || ||||||| || ||||| |||||||| Sbjct 1324 TTCAGTTTCCGCGAATCAGAGCTGACGGTGCTCAATGGGGTCAACGGGCACGGAAA 1269 Score = 105 bits (116), Expect = 3e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 13689 ATGAGCATGAATCTTATGGCTAAGGCCATGAATATAAAGGTTGGCAACCCACTGAGAAAA 13748 ||||| |||| ||| ||||| ||||| ||| ||| | ||| ||||| | ||||||||| Sbjct 3175 ATGAGTATGAGTCTGATGGCGAAGGCAATGGGTATCAGGGTAGGCAATTCCCTGAGAAAA 3116 Query 13749 CTGGTTCTGATTAAACTTGCCGATAACGCCAATGATAATGGCGAATGCTGGCCTTCATAT 13808 ||||| ||||| ||| | || ||||| || || || || || || |||||||||||||| Sbjct 3115 CTGGTGCTGATCAAATTAGCGGATAATGCGAACGACAAAGGGGAGTGCTGGCCTTCATAC 3056 Query 13809 CAACATGTCGCTGACCAGTGTGA 13831 | || | ||||| || || || Sbjct 3055 CGGCACATTGCTGATCATTGCGA 3033 >seq2629 Length=15125 Score = 149 bits (164), Expect = 3e-31 Identities = 243/354 (69%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 21148 GGAGGCTGCTTAAT--GGCTAAACCAGCGCGAAGGAAATGCAAAATCTGTAAGGAATGGT 21205 |||||||| | ||| |||||| ||| |||| || |||||||| |||| || |||| Sbjct 352 GGAGGCTGTTAAATATGGCTAACCCAAGGCGACGGCGCTGCAAAATATGTAGAGAGTGGT 293 Query 21206 TTCACCCGGCATTCTCAAATCAGTGGTGGTGCTGCCCGGAACACGGAACTCAATTAGCAC 21265 |||| || | | |||| |||||| |||| || |||||| | |||||||| Sbjct 292 TTCATCCCAAGTACGAAAATATAGAGTGGTGTAGCCCAGAGCACGGAGCAGAATTAGCAA 233 Query 21266 TCGAACGACGAAGTAAAGAACGCGAAAAAGCGGAAAAAGCANNNNNNNNNNNNNNNNNNN 21325 || | ||||||||||| || | |||||| ||| || Sbjct 232 TCAAGCGACGAAGTAAGGAGAGAGAAAAACTAGAAGC--CAAACTCAAGAAAGAACAGAA 175 Query 21326 NNGAGGAGCAGAAACAGAAAG--ATAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCG 21383 | || || || || | ||||||| || || || | || |||| ||||| Sbjct 174 GCAAAAAGAAGTAAAAGCCCGCGATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCG 115 Query 21384 CAGTTACTGGATTAAACAAGCCCAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCG 21443 |||||| |||||||||||||| ||||||||||| ||||| | ||||||||||||||||| Sbjct 114 CAGTTATTGGATTAAACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCG 55 Query 21444 CGACTTACCATGTATCTCGTGCGGAACGCTCACGTCTGCTCAGTGGGATGCCGG 21497 || || ||||| || || ||||||||| | ||||||||||||||||| || Sbjct 54 TGATTTGCCATGCATATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2774 Length=20939 Score = 89.7 bits (98), Expect = 2e-13 Identities = 202/298 (68%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 28570 TTTATGTA--GTTAACCATAATGGCGAACCATACGTTCCCATGAAACCTGTCGTTGCGGG 28627 |||||||| || ||||| | || | ||||||||||| ||||||||| || ||| | Sbjct 535 TTTATGTATCGTAAACCACGAAGGTAAGCCATACGTTCCAATGAAACCTATCATTGAAGA 476 Query 28628 GATGGGGCTGGCCTGGCAATCACAGTTGGCTAAGTTAAGACAGCGTTTTGCGTCAAC-TA 28686 ||||| | | ||| || ||||| ||||| ||| | | || ||| || || || Sbjct 475 TATGGGTTTAGATTGGGCGTCGCAGTTTACTAAGCTAAAAAAACGCTTTA-GTAAAGGTA 417 Query 28687 TAACGGAAATCGTTATGGTTGCTGAGGATGGGAAACAACGCAATATGGTGTCCATGCCAC 28746 | |||||||| || | | | | || | ||| |||| | | | | | || Sbjct 416 TTGTGGAAATCGCAATACCTTCGAAAGGCGGTGAGCAAT-CAAT--GATTTGCCTAGCAA 360 Query 28747 TTCGAAAACTTGCCGGCTGGCTACAAACCATTAATCCCAACAAAGTAAAACCCGAAATCC 28806 | | ||| | | || ||| || | | || | || |||||||| || || ||||||| Sbjct 359 TGCATAAATTATCAGGTTGGTTATATTCAATAATGCCTAACAAAGTTAAGCCTGAAATCC 300 Query 28807 GCGATAAGGTCATCCGGTATCAGGAAGAGTGCGACGATGTTCTTTACGAGTATTGGAC 28864 | || || || |||| ||| || ||||| |||||||| || ||||| ||||||||||| Sbjct 299 GAGACAAAGTAATCCAGTACCAAGAAGAATGCGACGACGTACTTTATGAGTATTGGAC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202732123388224