Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2252 127 2e-24 seq2162 98.7 1e-15 seq2318 89.7 5e-13 seq1739 89.7 5e-13 >seq2252 Length=1130325 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| |||||||| || || |||||||| || | | ||||| | || Sbjct 563173 AAGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATC 563232 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||| ||||| | || | ||||||||||| || |||||||||||||| || Sbjct 563233 TTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATC 563292 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || || | |||||| | || || || | || | ||| Sbjct 563293 TTGGATCTTGGCCTTCACGTTTTCGATAGTATCAGATCCCTCGACCTCCAGGGTGATGGT 563352 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||||||||| || ||||| |||||||| Sbjct 563353 CTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||| ||||| || || |||||||| || | | ||||| | || Sbjct 563527 AGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCC 563586 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || || ||||||||||| || |||||||| || || ||| Sbjct 563587 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 563646 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || ||| ||| || || || | || | |||| Sbjct 563647 TGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTC 563706 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||||||| || ||||| |||||||| Sbjct 563707 TTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||| |||||||| || |||||||| || | | ||| | | || Sbjct 562718 AGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATCC 562777 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || | |||||||| || || || ||||| ||||| ||| Sbjct 562778 TCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTATCT 562837 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| || || | || || | || ||||| | ||| | |||| Sbjct 562838 TGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATGGTC 562897 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||||||||| || ||||||||||||||| Sbjct 562898 TTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 562930 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||||||||| |||||||| || || |||||||| || || |||||| | || Sbjct 563755 AGGACTAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 563814 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || || |||||||| ||||||||||| || || || || Sbjct 563815 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCC 563874 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || ||| ||| || || || | || | |||| Sbjct 563875 TGGATCTTAGCCTTGACGTTTTCGATAGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTC 563934 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || ||||| |||||||| Sbjct 563935 TTTCCCGTGAGGGTCTTGACGAAGATTTGCAT 563966 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||| || || |||||||| || | | ||||| | || Sbjct 562215 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCC 562274 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || || ||||||||||| || || || || || || || Sbjct 562275 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCC 562334 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| || ||| | || || | || || || | || | |||| Sbjct 562335 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTC 562394 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || |||||||||||||| ||||| || |||||| Sbjct 562395 TTTCCGGTCAAAGTTTTCACGAAGATCTGCATT 562427 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || ||||| || || |||||||| || || |||||| | || Sbjct 562945 AAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATC 563004 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||| ||||| | || | ||||||||||| || |||||||| || || || Sbjct 563005 TTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTC 563064 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || ||| | || ||| ||| || || || | || | || Sbjct 563065 TTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGT 563124 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || || || |||||||| Sbjct 563125 CTTTCCCGTGAGGGTCTTGACAAAGATTTGCAT 563157 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| | ||||| || |||||||| || |||||||||||||| || || || || Sbjct 562558 CTTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTT 562617 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| ||| | || || | | || || || | || | ||||||||| || Sbjct 562618 GGCCTTCACATTCTCGATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGT 562677 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | || || ||||| ||||||||| Sbjct 562678 GAGGGTCTTGACGAAGATTTGCATT 562702 >seq2162 Length=74254 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | ||||| | ||||| | ||||||||| Sbjct 49295 GTGGACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTGCCA 49236 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || ||||||||||||||||||||||||||||| || ||||| | | || ||||| Sbjct 49235 GCAAAGATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGGA-TCTTAGCTTT 49177 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | || ||| | || || || | ||| | || ||||| |||| ||| Sbjct 49176 CACGTTTTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATCGTTTTGCCTGTCAGAGT 49117 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 49116 CTTGACAAAGATCTGCAT 49099 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||||||| ||||| ||||| || || | ||||| | || ||||| ||| Sbjct 49073 TGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTGCGGCCATCCTCAAGTTGC 49014 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || | |||||||| || || || ||||||||||| ||||| | | || Sbjct 49013 TTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTG-AATCTT 48955 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| || || | | |||| | | || ||||| | || | || ||||| || Sbjct 48954 AGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAATGTGATCGTTTTGCCCGT 48895 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | || || |||||||| |||||| Sbjct 48894 GAGGGTCTTCACGAAAATCTGCATT 48870 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || || || || |||||||| || | ||||| | ||||| | |||||| ||||| Sbjct 49651 GACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCG 49592 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 | || || || || || || || ||||||||||| || || || || || ||| ||| Sbjct 49591 AAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCACA 49532 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| | | ||| | || || || | ||| | |||||| |||||||| ||||| Sbjct 49531 TTCTCGATCGAATCGGATCCTTCAACCTCGAGAGTGATGGTCTTTCCGGTCAACGTTTTC 49472 Query 64430 ACGAAAATTTGCATT 64444 ||||| || |||||| Sbjct 49471 ACGAAGATCTGCATT 49457 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || ||||| || || | |||||| | || Sbjct 48855 AAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATC 48796 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || ||||| ||||| | || || || || || || || |||||||||||||| || Sbjct 48795 CTCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTC 48736 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | || ||||| || ||| | | ||| | || || || | ||| | || Sbjct 48735 TTG-AATCTTAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGG 48677 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || ||||| ||||| ||||| || |||||| Sbjct 48676 TCTTTCCTGTCAACGTTTTCACGAAGATCTGCATT 48642 >seq2318 Length=474513 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| | || || ||||||||||| || || ||||| || || || || || || Sbjct 465023 CTTACCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGGATCTT 464964 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| ||| | || ||| ||| || || || | || | ||| |||||||| Sbjct 464963 GGCCTTGACATTCTCGATGGTGTCAGAGGCCTCGACCTCGAGGGTGATGGTTTTGCCGGT 464904 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || |||||||| ||||| Sbjct 464903 CAAAGTCTTGACGAAAATCTGCAT 464880 >seq1739 Length=92152 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| | || || ||||||||||| ||||| || ||||| || ||||| || || Sbjct 75671 CTTACCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGAATCTT 75612 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| ||| | ||| || | ||| || || || | || | ||||||||| || Sbjct 75611 GGCCTTGACATTCTCGATTGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGT 75552 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| || ||||| Sbjct 75551 CAGCGTCTTGACGAAGATCTGCAT 75528 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| | || || ||||| ||||| |||||||| |||||||| ||||| || || Sbjct 76497 CTTACCGGCAAAGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTT 76438 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || || | ||| |||| ||| || || || | || | |||||||||||| Sbjct 76437 CGCCTTGACGTTTTCAATTGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76378 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| || ||||| Sbjct 76377 GAGCGTCTTCACGAAGATCTGCAT 76354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| | ||||| || ||||| || ||||| || ||||| || || || || || Sbjct 76771 CTTACCGGCAAAGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTT 76712 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| ||| | || || | ||| || || || | || | |||||||||||| Sbjct 76711 CGCCTTGACATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76652 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || |||||||| ||||| Sbjct 76651 GAGAGTCTTGACGAAAATCTGCAT 76628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499626912716160