Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1889 100 3e-16 >seq1889 Length=309471 Score = 100 bits (110), Expect = 3e-16 Identities = 217/321 (68%), Gaps = 8/321 (2%) Strand=Plus/Minus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 || || || || || ||||||||||| ||||| || || ||||| || |||||||||||| Sbjct 14128 CTTCTGGTTGCTCCGATGCCCACGGCGTCCACTGCTCAAATCCTCGGAAACAACGAGTCG 14069 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 |||| || | |||||||||| | |||| | | || || || |||| || |||| || Sbjct 14068 ATCGAGCCGTACACCTCCAACATCTACAGCCGTCGTGTCCTTTCCGGCGACTTCCAGATC 14009 Query 95215 ATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAG 95274 ||||| ||| | || |||| || ||| |||||| ||||| ||||| Sbjct 14008 GTCAACCCTCACTTGCTCAAGGACTTGGTTGAGCTGAACCTGTGGGACGACAAACTCAAG 13949 Query 95275 AACCAACTGCTACGCGCCAA---CGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGA- 95330 ||| | | | ||| || || ||| ||||| |||| | | || || |||| Sbjct 13948 AACGA---GATCATCGCGAAGGGTGGATCCATCCAGGGCATCGCCGACATTCCCAAGGAT 13892 Query 95331 CATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGC 95390 | |||| | | |||||||| || ||||||||| | ||| | || | || || Sbjct 13891 CTGCAAGAC-TTGTACAAGACGGTCTGGGAGATCTCTCAGAAGGACATCATGGAGATGGC 13833 Query 95391 GGCCGCCCGCGGGCCCTTCAT 95411 ||||| |||||| ||| ||| Sbjct 13832 GGCCGACCGCGGCGCCTACAT 13812 Score = 100 bits (110), Expect = 3e-16 Identities = 180/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || ||||| |||||||| || ||| ||| |||||| ||| || ||||| | || Sbjct 15418 CCCACCCTCTTCAACGCCGGAACCTGCAAGCCCCAGATGAGTTCCTGCTTCCTTCTCACA 15359 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | | | ||||||||| ||| || ||| | | |||| | | || || ||||| Sbjct 15358 ATGCACGATGACTCCATCGACGGCATCTTCAAGACCCTCTGGCAGTGCGCCTTGATCTCC 15299 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || | || || || ||||| ||| | ||| | | || ||| ||| || || Sbjct 15298 AAGTCGGCCGGAGGCATCGGACTCAACGCGCACTGCATTCGCGCCTCGGGAACCATGATT 15239 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 || ||||| ||||||||||||||||| |||| |||||||| || | ||||||| || Sbjct 15238 GCGGGAACCAACGGCACCTCCAACGGCCTGATCCCCATGCTCCGAGTGTACAACAACACG 15179 Query 94138 GCGCGCTACGTGGACCAGGGTGG 94160 || |||||||| || || || || Sbjct 15178 GCTCGCTACGTCGATCAAGGAGG 15156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494705488909440