Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1889 156 4e-33 seq2162 107 2e-18 >seq1889 Length=309471 Score = 156 bits (172), Expect = 4e-33 Identities = 346/513 (67%), Gaps = 7/513 (1%) Strand=Plus/Plus Query 153229 TCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGC 153288 ||||||| ||||| || | ||| || || ||| | ||| ||| | | || ||| Sbjct 14221 TCCACATCTCGTATTGGAGCACGCCGCGGCTGACCGGAGAGCCTTCGTAGGTTTCATAGG 14280 Query 153289 TGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGG 153348 |||| | | ||||| |||||| || |||||| | | | | ||| ||||||||| Sbjct 14281 GTCCGTACAGCTCCGCCAGCTCGCAGGAAGACTCGAGGGAGGCGTGGTAGATGGTTTCGA 14340 Query 153349 CGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAA 153408 |||| | || || | || ||||| || | | || | ||||| ||||| || Sbjct 14341 AGATTCGCTTGTTCATGTCGCGGGCTTCAGGACTGGTGAAGGGGAAGCGCATCAGCATAA 14400 Query 153409 AGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCC 153468 ||||||| || || ||||||| |||| || ||||| || ||| || |||| | | Sbjct 14401 AGGCGTCCGCGAGTCCCTGGACTCCGATTCCAATGGGACGGTGCCGCTTGTTGGAG-GTT 14459 Query 153469 TCGCGCTC-GCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACC 153527 ||| || | | ||||| | |||| ||||| || |||||||||||||| || Sbjct 14460 TCGGCTTCAGGAACAGGATAATAGTTGCCGTCGATGATCTTGTTGAGGTTGCGAGTGACG 14519 Query 153528 ACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCAT 153587 || ||||| ||||| | || |||||| | || ||||| | || || | ||| || Sbjct 14520 ACCTTAGTGATCGCGTGGAGCTTCTCGTAGTCGAAGGTCTTGTCCTCCTTG---ACGAAT 14576 Query 153588 CGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTG 153646 || |||| ||||| || || | || || ||||| || || || | || |||||| Sbjct 14577 CGGTTCAACGCAATCGAAGCTAAGTTGCACACGGCGACTTCGTCGGGAGACG-AGTACTG 14635 Query 153647 CACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTT 153706 |||||||| | ||| |||||| ||| || || |||| || ||||| || || Sbjct 14636 GACGATCTCAGTGCACAGGTTGGAGCACTTGATCGTTCCCAGGTTCTGCTGGTTCGACTT 14695 Query 153707 GCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 ||| ||||| ||||| ||| |||||||||| || Sbjct 14696 GCGGTTGCAGGCGTCCTTGTAGAGCATGTAAGG 14728 Score = 123 bits (136), Expect = 2e-23 Identities = 305/459 (66%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 154071 TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGG 154130 || || || |||||||||| ||| || | |||||| | || || | |||||| |||| Sbjct 15153 TTGCCTCCTTGATCGACGTAGCGAGCCGTGTTGTTGTACACTCGGAGCATGGGGATCAGG 15212 Query 154131 CCGCTTGCGGTGCCGTTGGT---CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGC 154187 ||| | | |||||||||||| || | ||| || | || |||||| | ||| Sbjct 15213 CCGTTGGAGGTGCCGTTGGTTCCCGCA---ATCATGGTTCCCGAGGCGCGAATGCAGTGC 15269 Query 154188 ACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTG 154247 |||| | || ||||| ||| | |||| || || ||||| | | || ||| || Sbjct 15270 GCGTTGAGTCCGATGCCTCCGGCCGACTTGGAGATCAAGGCGCACTGCCAGAGGGTCTTG 15329 Query 154248 TAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA 154307 |||||||||||||| || ||| | | ||| | ||| || |||| ||| || || Sbjct 15330 AAGATGCCGTCGATGGAGTCATCGTGCATTGTGAGAAGGAAGCAGGAACTCATCTGGGGC 15389 Query 154308 ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACAGTTTTTGGCTCAT 154366 ||| ||||| || ||||||||||| ||||| || || ||| | | ||| Sbjct 15390 TTGCAGGTTCCGGCGTTGAAGAGGGTGGGCGATGCGTGGGTGAACCAGCGATCCG-ACAT 15448 Query 154367 CATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCG 154426 | | ||| ||||||||||| | ||||| || || ||| | || | || || || Sbjct 15449 GAGGTTGTAGGTTTCGATGGCAGCGTCGATGTCCTCCTTGTGGACTCCCACGGCCACACG 15508 Query 154427 CATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATT 154486 ||| |||||||| || ||||| || | ||| | || ||||||| | || Sbjct 15509 CATAAGCATGTGTTGGGGACGCTCAGTGACCTTGCCGTTGATCTTCAGCAAGTACGACCG 15568 Query 154487 TTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATC 154525 ||| |||||||| | |||||||| |||| | ||||| Sbjct 15569 TTCCAGGGTTTTAAACCCGAAATAGGTGTACGCGAAATC 15607 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 153842 CTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGA 153901 ||| ||||| | |||||| ||| | ||| |||||||||| ||| || ||||||| || Sbjct 14876 CTCGAACTCTTTGCCGTAAGTGTCAGGGAGTCCGGGACACTTATGAGGGCACATCAAAGA 14935 Query 153902 CCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACAT 153961 |||| | ||| | ||||| ||| |||||| || || || | ||| || |||| | Sbjct 14936 CCACTCTTTGTCCTCCTTGACACGTTCCATGAAGAGGTCAGGGATCCACAGGCCGTAGAA 14995 Query 153962 GAGGTCGCGCGCCTTGCAATCCTCCGCGCCCA-TGTTGCGTTTCAGATTGAGCA-CGCTA 154019 ||||||||| || || | || || ||| |||| || || || || | | | | Sbjct 14996 GAGGTCGCGGGCGC-GCTCTTCTTCGGATCCAGTGTTTCGCTTGAGGCGCAGGAACTCGA 15054 Query 154020 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGC 154054 | |||||||||||||| || || | ||||| ||| Sbjct 15055 AA-ATGTCGGCGTGCCATGGCTCGACGTAGATGGC 15088 >seq2162 Length=74254 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| |||| ||| || || || | || || || | | Sbjct 49292 GACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTGCCAGCA 49233 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| ||||| || ||||| ||||| ||| || ||| | Sbjct 49232 AAGATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGGATCTTAGCTTTCACG 49173 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | ||| ||||| | || | |||||| || |||||||| || Sbjct 49172 TTTTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATCGTTTTGCCTGTCAGAGTCTTG 49113 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 49112 ACAAAGATCTGCAT 49099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| |||||||||| || || ||||| ||||| || |||| Sbjct 48836 GACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATCCTCCAGTTGCTTTCCGGCG 48777 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| ||||| ||||| || || || || ||||||||||| ||| | || | ||| | Sbjct 48776 AAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTC-TTGAATCTTAGCTTTCAC 48718 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | || ||| | || ||||||| || | || || || |||| ||||| Sbjct 48717 GTTCTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGGTCTTTCCTGTCAACGTTTT 48658 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 48657 CACGAAGATCTGCAT 48643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496244633806080