Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq2774 221 5e-53 seq2599 201 4e-47 seq2629 150 7e-32 seq2270 150 7e-32 seq2569 122 3e-23 >seq2774 Length=20939 Score = 221 bits (244), Expect = 5e-53 Identities = 363/516 (70%), Gaps = 17/516 (3%) Strand=Plus/Minus Query 49309 AGCCTTATGTTCCTATGAAGCCTGTTGTTGAAGGTATGGGGATGGTTTGGGCTGCTCAAT 49368 |||| || ||||| ||||| ||| | |||||| |||||| | | |||||| | || | Sbjct 509 AGCCATACGTTCCAATGAAACCTATCATTGAAGATATGGGTTTAGATTGGGCGTCGCAGT 450 Query 49369 TTGTTAAGTTAAAACAGAGGTTTGTCAAAGGTATTTCGGAAATCGAAATACCTTCTGCTG 49428 || |||| ||||| | | ||| ||||||||| |||||||| ||||||||| | Sbjct 449 TTACTAAGCTAAAAAAACGCTTTAGTAAAGGTATTGTGGAAATCGCAATACCTTCGAAAG 390 Query 49429 GCGGTAAACAGTTAATGACATGTCTTGCCTTTCGTAAATTTGCGGCTTGGCT---TTCAA 49485 ||||| | || | ||||| || || || | | |||||| | | |||| | ||||| Sbjct 389 GCGGTGAGCAATCAATGATTTGCCTAGCAATGCATAAATTATCAGGTTGGTTATATTCAA 330 Query 49486 GCATTCAACCAAACAAAGTCCGCCCTGAAATCCGCGACAAGGTAATCCAGTATCAGGAAG 49545 || | | |||||||| ||||||||||| ||||| ||||||||||| || |||| Sbjct 329 TAATGC---CTAACAAAGTTAAGCCTGAAATCCGAGACAAAGTAATCCAGTACCAAGAAG 273 Query 49546 AGTGTGACGATGTGCTCTACGAGTACTGGACTAAAGGCCATGTGAT---TAACCCGCGCA 49602 | || ||||| || || || ||||| ||||||| ||| | || | ||| || |||| Sbjct 272 AATGCGACGACGTACTTTATGAGTATTGGACTACTGGCGAAGTTAAAGCTAAACCACGCA 213 Query 49603 AA---GCTAAAAAGGCATTGCCGGGGAAAATCACCACTGAACAGCAGGAAGCCATTAAAC 49659 || | |||| | || || || | | || | |||||||| ||||| ||||| | Sbjct 212 AACAAGTTAAACAA--ATCGCTGGTCGTATT-ACTTCAGAACAGCAAGAAGCAATTAAGC 156 Query 49660 AACTCGTCATGAGTCGCGGTCAGTCTCTGCCAAAAGAAAAACAGGCGAAGGCGATGATCA 49719 ||||||| | | ||||||| | | | || ||||| || || || || || ||||| | Sbjct 155 AACTCGTTTTAAATCGCGGTAAAGCATTACCCAAAGAGAAGCAAGCAAAAGCAATGATAA 96 Query 49720 CCATGTGGTCGTCACTGAAATCTCATTTTGGGTGTTCATACAAAGAAATCAGCGAG-GAG 49778 | || ||||| || || ||| ||||||||| || | ||||||||||| | || || Sbjct 95 CTATTTGGTCATCGCTAAAAAGTCATTTTGGTTGCACGTACAAAGAAAT-TGATAGCGAT 37 Query 49779 CAGTTTACCGAAGCTCTGTCACTTGCTGCTCGCGTT 49814 | || || ||||| | ||||| ||||| || ||| Sbjct 36 AAATTCACAGAAGCATTATCACTGGCTGCGCGTGTT 1 >seq2599 Length=15424 Score = 201 bits (222), Expect = 4e-47 Identities = 375/544 (69%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 23599 CTCACCAAAGAACAGCATGAGTGGCTGAATGGCTGGCTTGAACTGTGGGGCGCATGGGTT 23658 || || ||| |||||| || ||| | || |||| | | ||||||| ||||||||| Sbjct 11615 CTAACAAAACCACAGCAGGACTGGATTGATAACTGGTTAAATTTGTGGGGGGCATGGGTT 11674 Query 23659 TATTCAGGTCGTCTGGAAAAGCGCATGAGCAGCGTAATAGCTAAATTCATGGAGAGCGTG 23718 | || | | || |||||| || | | | || ||| |||||| || || Sbjct 11675 CACAGTGGCAGAATCGATAAGCGCCAGATAAACATGATTTATAAGTTCATGATGACTGTT 11734 Query 23719 GAGCCGGG-AAGAGTTATGACAAGGCCAATGTGTAATGATGATGATGGAATGTTGATTTC 23777 ||||| | ||| | | ||| | || |||| |||||||||||||| ||||||||||| Sbjct 11735 GAGCCTCGCAAGGGGCAAGACC-GCCCTGTGTGCAATGATGATGATGGTATGTTGATTTC 11793 Query 23778 TCAGGTCGTCGATTCCGTCATGTACATTGACAAGAAAGCCTTTGGCATCCTCCTCAGCTA 23837 |||||| |||||| |||| |||| ||||||| | ||||||| ||| || | |||||||| Sbjct 11794 TCAGGTGGTCGATGCCGTTATGTGCATTGACCAAAAAGCCTATGGGATTTTACTCAGCTA 11853 Query 23838 CTACGCCCACGGCTCTCCCAAGCACGCCATTGCATCTTACTATCATAGCGTCGCAAGACC 23897 |||||| |||||| | | |||| | ||| || |||| ||||| | | || | ||| Sbjct 11854 CTACGCTCACGGCGCATCGAAGCTGTCAATTTCAACTTATTATCACAAGATTGCGAAACC 11913 Query 23898 TCGCAAGATGTTATGCCGGG--GCGGCGGGCGCATTCAAAAACCATCGCTAGCAACCTGC 23955 |||| ||| ||| || | ||||||||| | || || || | | || || Sbjct 11914 CCGCAGAATG--ATGACGCGCTCTGGCGGGCGCTTAAGGAAGCCTTCTCGTGGGACATGT 11971 Query 23956 CGACGGGAAGTTGACGAAATCCTCAATGCCTCGTTGTTTA--TGATTTACCCGATTCTGG 24013 || || ||||| || ||||| || || | |||||| | | || | | |||| Sbjct 11972 CGCCGTGAAGTGGATGAAATTCTGGCAGC--CAGTGTTTACCTATTATATCAGCCTCTGC 12029 Query 24014 ATAGTGCGTTTAAAAACCGGAAACGTGTAGAGAAAATTAAGCATGTAGCATAGAACGTGT 24073 | | ||| ||||| || ||||||||||||||||| || | | || |||||||||| Sbjct 12030 AAAATGCATTTAATTCACGTAAACGTGTAGAGAAAATCAAAAAGATTGCCTAGAACGTGT 12089 Query 24074 TGACATCGTTGAGCAAATGAGCAACACTATTCGCATAAGCTGCCGTTAGTGACTCTTAAG 24133 ||||| ||||||||||||||| | | || | | | |||||| |||| ||||| | Sbjct 12090 TGACACTAATGAGCAAATGAGCAATAATTTTTGGTAAGGTTGCCGTCAGTGTTTCTTAGG 12149 Query 24134 TTGC 24137 | || Sbjct 12150 TGGC 12153 >seq2629 Length=15125 Score = 150 bits (166), Expect = 7e-32 Identities = 245/354 (69%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 22302 GGAGGCTGCTTAAT--GGCTAAACCAGCGCGAAGGAAATGCAAAATCTGTAAGGAATGGT 22359 |||||||| | ||| |||||| ||| |||| || |||||||| |||| || |||| Sbjct 352 GGAGGCTGTTAAATATGGCTAACCCAAGGCGACGGCGCTGCAAAATATGTAGAGAGTGGT 293 Query 22360 TTCACCCGGCATTCTCAAATCAGTGGTGGTGCAGCCCGGAACACGGAACTAAATTAGCAC 22419 |||| || | | |||| |||||| ||||| || |||||| | |||||||| Sbjct 292 TTCATCCCAAGTACGAAAATATAGAGTGGTGTAGCCCAGAGCACGGAGCAGAATTAGCAA 233 Query 22420 TCGAACGACGAAATAAAGAACGCGAAAAGGCGGAAA--AAACAGCAGAGAAGAAACGACG 22477 || | ||||||| ||| || | ||||| ||| |||| ||| ||||| || | Sbjct 232 TCAAGCGACGAAGTAAGGAGAGAGAAAAACTAGAAGCCAAACTCAAGA-AAGAACAGAAG 174 Query 22478 ACGAGAGGAGCAGAAANNNNNNNNNNNNNNNNNGATTCGAAAACTCGCCTTAAAGCCCCG 22537 | || || | || | || || | || |||| ||||| Sbjct 173 CAAAAAGAAGTAAAAGCCCGCGATAAACTCAAAGCC-CGCAAGTTAGCAGTAAAACCCCG 115 Query 22538 CAGTTACTGGATTAAACAAGCCCAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCG 22597 |||||| |||||||||||||| ||||||||||| ||||| | ||||||||||||||||| Sbjct 114 CAGTTATTGGATTAAACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCG 55 Query 22598 CGACTTACCATGTATCTCGTGCGGAACGCTCACGTCTGCTCAGTGGGATGCCGG 22651 || || ||||| || || ||||||||| | ||||||||||||||||| || Sbjct 54 TGATTTGCCATGCATATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2270 Length=26257 Score = 150 bits (166), Expect = 7e-32 Identities = 231/327 (71%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 52572 AAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGACATGCTGACTCACCCGCGC 52631 |||||||| |||| ||| |||||||| ||| | | || || |||| || | || Sbjct 5162 AAACCGGCCTACACCAATAACCCGGCGTGGATATTCTACGATTTGGTGACCCATACCCGT 5103 Query 52632 TACGGCATGGGAAAACGCCTGGGGGCGGC-GGATGTGGACAAGTGGGCGCTGTATGCCAT 52690 || ||||| || || | ||||||| || |||| |||||| || ||||||||||| Sbjct 5102 TATGGCATCGGCAAGCTGATGGGGGCATTTGGCTGTG-ACAAGTTCGCCCTGTATGCCAT 5044 Query 52691 TGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTTCGGGGGCACAGAGCCGCGGATGAC 52750 |||||| || || |||||| | || || ||||| || || ||||| || || || | || Sbjct 5043 TGCGCAATATTGTGACCAGCTCGTGCCGGATGGATTTGGTGGCACCGAACCCCGCTTTAC 4984 Query 52751 CTTTAATGCGTACCTGTCACAACAGCGTAAGGCGTGGGACGTTCTCAGTGATTTCTGCTC 52810 || ||||||||| | | | || |||||||| |||| || || |||||| ||| Sbjct 4983 CTGCAATGCGTACATCGCCAATCAACGTAAGGCACGGGATGTGCTGGATGATTTGGCCTC 4924 Query 52811 GGCGATGCGCTGTATGCCGGTATGGAACGGCCAGACGCTGACGTTCGTTCAGGACAGCCC 52870 || | | || |||||| ||| |||||||| | | ||||| | | |||||||| | || Sbjct 4923 GGTGTTTCGGGGTATGCAGGTCTGGAACGGGCTGCAACTGACCTGCTTTCAGGACCGGCC 4864 Query 52871 GTCGGATGTGGTGTGGCCGTACACCAA 52897 | ||| ||| ||| | | |||||| Sbjct 4863 TGCCGATCCGGTCTGGACATTCACCAA 4837 Score = 96.9 bits (106), Expect = 1e-15 Identities = 198/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 50381 GAGATTGTGGCACTGGTCCACAGCCACCCCGGTGGTCTGCCCTGGCTGAGCGAGGCCGAC 50440 ||||||| ||| | || |||||||| || |||| ||| ||||| | | ||| Sbjct 7023 GAGATTGAGGCCATTGTGCACAGCCATCCTAACGGTCAACCCCATCTGAGTGCCGAAGAC 6964 Query 50441 CGGCGGCTGCAGATAAAAAGTGCACTGTCCTGGTGGCTGGTCTGCCGGG---GGGAAATT 50497 || || | ||||||||||| ||| | |||||| ||||||| | | ||| | Sbjct 6963 CGCCGACAGCAGATAAAAACCAGGCTGCCGTGGTGGTTGGTCTGTGGTGATCGGG---TG 6907 Query 50498 CATAAATTCCGCTGTGTGCCACATCTGACAGGACGGCGC---TTTGAGCACGGGGTGACG 50554 ||| ||||||| ||||| | | | | || ||||| ||| |||||| | | Sbjct 6906 CATCAATTCCGACCGGTGCCGCGTTT-ATTGG--GGCGCGAATTTATCCACGGGTTACAG 6850 Query 50555 GACTGTTACACGCTGTTCCGGGATGCCTACCATCTGGCGGGAATTGATATGCCGGATTTT 50614 || || ||| ||||| ||||||||||||||||||||||||| ||||| | ||| || Sbjct 6849 GATTGCTACTCGCTGATCCGGGATGCCTACCATCTGGCGGGGATTGAGTTAGACGATATT 6790 Query 50615 GAGCGTGAGGATGACTGGTGGCGCAACGGTCAGAACCTTTACCTGGACAA 50664 ||||| || | |||||| || || |||||||| || || || || Sbjct 6789 CCCCGTGATGAAGCATGGTGGAACACGGGGCAGAACCTGTATCTCGATAA 6740 >seq2569 Length=9853 Score = 122 bits (134), Expect = 3e-23 Identities = 365/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 60963 CGCAATCCCGCCAGCCTGACAAAGCTGATGACGGGCTATGTCGTGGATCGCGCTATCGAT 61022 ||| |||| |||||||||||||| ||||||| | ||||| | | || ||||| | Sbjct 5625 CGCGATCCTGCCAGCCTGACAAAAATGATGACCAGTTATGTTATTGGTCAGGCTAT--AA 5682 Query 61023 AGTCATCGCATTAC-GCCAGAC-GATATTGTCACCGTGGGGCGCGATGCGTGGGCGAAAG 61080 | ||| | | | ||| || ||||| || |||||||| ||||| ||||| | || Sbjct 5683 AATCAGGGAAAATCAGCCCGAATGATATCGTTACCGTGGGTAAAGATGCCTGGGCAACAG 5742 Query 61081 ATAATCCAGTGTTTGTCGGTTCTTCACTGATGTTTTTGAAAGAGGGCGATCGCGTATCGG 61140 || || || || || ||||| ||||||||||| ||| ||||||| || || | Sbjct 5743 GAAACCCTGTATTCAAAGGCTCTTCCCTGATGTTTTTAAAACCCGGCGATCAGGTTTCTG 5802 Query 61141 T--ACGTGATTTAAGCCGTGGTTTAATTGTGGATTCCGGAAATGACGCTTGTGTTGCACT 61198 | | || ||| |||||| | | || | || || ||||| || ||||| ||| | Sbjct 5803 TCGCCATGCTTT--CCCGTGGCATCAACCTGCAATCAGGTAATGATGCCTGTGTGGCAAT 5860 Query 61199 GGCTGACTATATTGCCGGTGGGCAACGGCAGTTTGTTGAAATGATGAACAACTATGCCGA 61258 ||| || ||| | || || | || |||||| ||||||| || |||| | Sbjct 5861 GGCGGATTATGTCGCTGGCAGTCAGGATGCGTTTGTCAGCCTGATGAATAAATATGTTCA 5920 Query 61259 GAAGCTGCATCTCAAGGATACGCATTTTGAAACAGTGCATGGTCTGGATGCACCAGGTCA 61318 ||| | | || | || |||||| | || || |||||||||||||| ||| || Sbjct 5921 GAACTTAGGGTTAAAAAACACACATTTTCAGACTGTTCATGGTCTGGATGCCGAAGGCCA 5980 Query 61319 GCATAGCTCGGCTTATGATTTAGCTGTGCTTTCTCGCGCTATCATCCACGGCGAGCCCGA 61378 | ||||| ||| ||||| | || || || || || | | | || | || || Sbjct 5981 ATACAGCTCTGCTCATGATATGGCCCTGATTGGTCAGGCGCTGGTTCGCGATGTACCAGA 6040 Query 61379 GTTTTATCATATGTACAGTGAGAAAAGTCTCACCTGGAACGGTATCACCCAGCAAAACCG 61438 || || || | |||||| |||| | ||| ||| ||||| ||||| Sbjct 6041 TGAATACGCCATCTATAAAGAGAAAGAATTCACTTACAACAATATTCGCCAGCCTAACCG 6100 Query 61439 TAACGGGTTATTGTGGGATAAAACCATGAATGTTGACGGCCTGAAAACGGGTCATACTTC 61498 |||||| ||| |||||||||| | ||||||| || || | ||||| || ||||| Sbjct 6101 TAACGGTTTACTGTGGGATAAGGGCCTGAATGTCGATGGTATTAAAACAGGGCATACCAG 6160 Query 61499 TGGTGCCGGGTTTAATCT 61516 ||||| || | ||| || Sbjct 6161 CGGTGCTGGCTATAACCT 6178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198738662784832