Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2162 95.1 9e-15 seq2252 86.0 4e-12 >seq2162 Length=74254 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | || | ||| | || || || || || || || |||||||| || || Sbjct 49325 CCTCCTCGAAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTC 49266 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| || || |||||||| | |||| ||||| |||||| ||| Sbjct 49265 AAAGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGGA 49206 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || || ||| || |||| || || || | || || Sbjct 49205 ATTCCTTCCTTGTCTTGGATCTTAGCTTTCACGTTTTCAATGGTGTCAGAACCCTCGACC 49146 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || ||||| ||||||||||| || ||||| || ||||| Sbjct 49145 TCAAGAGTGATCGTTTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 49099 >seq2252 Length=1130325 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||| ||| | | | | | ||||| || || Sbjct 563182 ATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAACTG 563241 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | ||||| ||||| ||||| ||||||||||| || || || || Sbjct 563242 CTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCTTGGATCTT 563301 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || |||| |||||||| || || || | ||| ||||| || || || Sbjct 563302 GGCCTTCACGTTTTCGATAGTATCAGATCCCTCGACCTCCAGGGTGATGGTCTTTCCGGT 563361 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || ||| || || || ||||||||| Sbjct 563362 CAAAGTCTTCACGAAGATTTGCATA 563386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357379525232240