Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_011551.1 Length=39867 Score E Sequences producing significant alignments: (Bits) Value seq2565 307 3e-79 seq2664 86.0 2e-12 >seq2565 Length=10326 Score = 307 bits (340), Expect = 3e-79 Identities = 988/1519 (65%), Gaps = 37/1519 (2%) Strand=Plus/Plus Query 36558 GCTCAGGTCGTCAAACTCTTCAACGGAAGCCACACCTCCCCCTGTAAAAGCATCACCATC 36617 ||||||||| |||||||| || || || || || || || |||| || ||||||||||| Sbjct 657 GCTCAGGTCATCAAACTCGTCCACTGACGCGACCCCACCGCCTGCGAATGCATCACCATC 716 Query 36618 ACGAAAAAATTGAACACCTCTTAATGAGGCTGAAACCCCTTTACCATTGTTGTCATAGCC 36677 || || || || || || | | ||| || || | |||||||| ||||| || || | Sbjct 717 GCGGAAGAACTGCACCCCGCCGAGTGAAGCCGAGATACCTTTACCGTTGTTATCGTAAGC 776 Query 36678 GTAAA-ACTCAATGGTGGCGTTCACGTAGCAGCCAGAGTAGGGACGACCATCCTGTGCGG 36736 ||| ||| | |||||||||| || || ||||| |||||||| | |||||||| |||| Sbjct 777 AAAAATACTGA-TGGTGGCGTTAACATAACAGCCGGAGTAGGGTCTGCCATCCTGAGCGG 835 Query 36737 TTAACGGGGAGGTGTTACGGTCAATGACTAATGGGCGGGATTTGTTACTGGCGCTGAGGT 36796 | | || | | || ||| ||||| || ||||| | | |||||||||||| | | Sbjct 836 TCAGAGGTGTGCGGTCACGATCAATTACCAATGGCCTTGCTTTGTTACTGGCCGAAATAT 895 Query 36797 ACAGGTTTCCGGCGTAACCGTCGTACTCT---TTACTATCCCCATCGCGTAAGCAAAAAC 36853 ||| || || || ||||| || || || ||| ||||||||| || || ||| | Sbjct 896 ACATGTGGCCTGCATAACCATCATAATCAGGCTTATCATCCCCATCACGGAAATTAAAGC 955 Query 36854 GGTTAGGATTATTACAAATGCTGTTATAGATTTTTTCGATATCCTTGTTGCCCCATTTTT 36913 | | ||| | ||| | || | || | || | || ||||||||| | Sbjct 956 GCATGTTATTGCCCCGGATGGTTTTCAAAATGCCTGCGG---CTTTAGCGCCCCATTTAT 1012 Query 36914 CGCCAATCACGTGTTTGATACCGGCTTTGATTTCCTCAATCAGGTCCGTACGACTTTTTG 36973 || | ||| | ||| | |||| ||||| ||| | || | || ||| | Sbjct 1013 CGGTAGCCACTTTGAGGATGGCAGCTTCTATTTCGGCAACTAACTCTTTGCGCTCTTTAG 1072 Query 36974 GGATAAGAAAATTGGCGCGGTATTTGAACGCCCCTTGACCACTGACTTGCGTAGGTTCAA 37033 | ||||| ||||| | ||||||||| || | ||||||||| | ||||| || | ||| | Sbjct 1073 GAATAAGGAAATTTGAGCGGTATTTAAAATCGCCTTGACCATTAACTTGTGTTGCTTCGA 1132 Query 37034 ATAACTCAGGAAAAGCCAGACGTACGTTGTTTAATTTGATTTTCATAAAGTTACCTTTTG 37093 |||| ||||| || |||||||| ||||| || || | |||||||| |||||||| Sbjct 1133 ATAATTCAGGGAATGCCAGACGCACGTTTTTCAAACTAATTTTCATGGTTCTACCTTTTT 1192 Query 37094 ATTAAATGGATTT-ATC---AACGAGTGCCGCTTCGGTCACATCGTCAAAGTCGTTTAAG 37149 ||| | ||| ||| |||||| || | |||| || |||||||| || |||| Sbjct 1193 ATTGTTTAGATAAGATCGGCAACGAGCGCATCATCGGATACGTCGTCAAAATCATTTATA 1252 Query 37150 GGGGTAGTAATAATGGCAGGTCTTGGGTCCGATTCCGGTGCGATAACGGGTTTACCATCT 37209 ||| | | | || || | ||||| ||||| | | | | || ||||| || Sbjct 1253 GGGTTGATGTCCAGTGCTGGACGAGGGTCAGATTCTGATACTACGGTAGGCTTACCGTCA 1312 Query 37210 GCTCGCTCAATAAGCGCTTCCAGTTTTGCCCATCGATGTGGTTTGTCTTTTTTAAGCAGT 37269 | || || || | ||||||||| ||||| | || | |||||||| |||| Sbjct 1313 GTCCGTGTGATGAGTGTTTCCAGTTTGGCCCACTTCTTCGGATACTCTTTTTTCAGCACC 1372 Query 37270 TTCTCAGCCTGGGGTGGGCTGATAATTTTCTTGTGGTAGATTTGCTCCTGTTTAAGTTTG 37329 || || ||||| | ||||||||| | |||||| ||| || || || || || |||||| Sbjct 1373 TTTTCTGCCTGCGTTGGGCTGATTAACTTCTTGGTGTACATCTGGTCTTGCTTGAGTTTG 1432 Query 37330 GCGCCTTTTAACAGTGTTTCGGCTTCACGTTCATCACCCCAGGTGCGATTACCCTGTTTG 37389 ||||||||||| | |||||| || ||| |||||| | || ||||| || || Sbjct 1433 AAGCCTTTTAACATCGCTTCGGCGTCTGTTTCGATACCCCAAGCCCGGTTACCTTGCTTA 1492 Query 37390 CCGGTAACCAGTTTAAAGCCAGGTACCGATTGCCCCGTATGTAATGCCTCGGCGACCCGA 37449 || |||||||||||||| || || | || |||| || | | | || ||| ||| Sbjct 1493 CCTTCTACCAGTTTAAAGCCGGGGACGGGATGGCCCGCATTGAGTTCATCACTGACTCGA 1552 Query 37450 TTTCGCAGGGCTTTACAAAAACTCTCTATCAAATCGACATGCGGGTAGAGTTTTGCCATT 37509 | || | ||| || || | | || | ||||| || |||| || | ||| | | Sbjct 1553 ATCCGAACGGCCTTGCACCAGCCTTCGACAAAATCAACCTGCGCATATTTGTCTGCTAAT 1612 Query 37510 TGTTCAGGGGTTAGTAGCGTAATGCGTTTT--GGTGCATCGCTTAATTGTGATGCCAGCG 37567 ||||| | |||| | | | |||| ||| | ||| || | | | || Sbjct 1613 --GTCAGGCTGTCGTAGTGGGGTACTTTTTCCTTTGCGTTCTGTAACTGAGGCTCTAACG 1670 Query 37568 GTTGGGTTAAATCGACAAAATCGCCTTTGACTTCATTATGGACGAATTGCGCCTGTGCAA 37627 | ||||| | |||| |||| || | || ||| || || | | | || Sbjct 1671 GCTGGGTCAGATCGTCAAAGTCATCCAAGAGGGTATTCATCACATGCTGGGTCAGGGC-- 1728 Query 37628 AACACAATCCACCTTTTGCTTTACAAAACAGGCATTGTTTAGCCCCCGGTGAAAAGGCAC 37687 |||||| | |||| || |||||||| | |||||||| | || || | || | | Sbjct 1729 TTCACAAT-TAGCTTTCGCCTTACAAAATCGACATTGTTTTTCGCCTGGGGTGAACGAAT 1787 Query 37688 TATCCGGTAGGGCATCGAGAC-----CACTGAGC--TCGGCAAGGGTTGCCATCTTCATG 37740 | |||| | |||| || || || || | |||| || || ||| Sbjct 1788 CCTGGGGTAACGTTTCGACACCTTCACATTGGGCAATATTGAAGG--TGACA-----ATG 1840 Query 37741 GCTTTTTGCGCGCCTGATTTAGCCTGTTCGCCAAAGTCTTTTAATTCGTCAA--CTGACA 37798 || | ||| || ||| || || |||||||| | ||| || |||| ||||| Sbjct 1841 ACTAATGCAGCGGCTTCTTTGGCTTGCTCGCCAAATTGCCGTAAATCTTCAACGCTGAC- 1899 Query 37799 GTGCCCATTCAGACAGATGGTTAAGTCTGGGCTGATGAATAAAAAGACGAACCGTTTTAA 37858 | |||||| || | ||||| | | ||||| || || || | || || || | || Sbjct 1900 -CGACCATTCTGAAACGTGGTTCAAGCGTGGCTGGTGGATGAACAAGCGCACGGTCTCAA 1958 Query 37859 AATCATAAACAAGGTCAAACTGTTGTAAAGCGCCCAGCGCATAAAGCATGAGCTGCTCAT 37918 | ||||| | | |||||||| | | || |||| || || ||||| | ||||| | Sbjct 1959 ATTCATACAACATCTCAAACTGATCCAGCGCACCCAATGCGTATAGCATCAATTGCTCGT 2018 Query 37919 TTTTCTGGGCATCCACTTTAACGCCTTTACCATATTTTAGGTCATGAATTTGTAGTTCAT 37978 | || || | || || ||||| ||||| ||||| ||||||||||||||||| || | Sbjct 2019 TACCCTCCGCGTAAACCTTCACGCCCTTACCGTATTTCAGGTCATGAATTTGTAGCTCGT 2078 Query 37979 CACTACTTACGATAATCGCATCTGCGGTGCCAAACGAATTATCTACGCCAATGACCGCTG 38038 || | | || || |||||||| || || || || || || || ||||| || | | Sbjct 2079 TACCGTTAATAATGATGGCATCTGCTGTACCGAAAGATTTCTCGACCCCAATCACATCAG 2138 Query 38039 AAAAGTCCACCCGTTCTTC 38057 |||| || || || | ||| Sbjct 2139 AAAAATCGACACGCTGTTC 2157 Score = 111 bits (122), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 39596 CTGCCAGTGTTGCCCTTTCACGACCGTTATTCTTTACGAAACGGTGCTAATCTTCTCGCC 39655 ||||||||||| ||| ||| || |||||| || | ||| ||||||| || | | Sbjct 4816 CTGCCAGTGTTCCCCGTTCGCGCCCGTTACTCACTCTCGTGCGGAGCTAATCATCCCATC 4875 Query 39656 AACCGGATCGCGTTTGGCGGTACATCGCATT---TTATGCGCAGGGGTCTCAACAGAAAA 39712 |||||||||||| | ||||||||||| | | |||| |||||||| ||||| | Sbjct 4876 GACCGGATCGCGTCCGATGGTACATCGCAGTACTTCATGCATAGGGGTCTAAACAGTAGG 4935 Query 39713 ATCTGTGCTGTTCCGACTTTCTAAATTGTTAAAGAGC 39749 ||||||||||||||||| |||||||||||||||| Sbjct 4936 GAGTGTGCTGTTCCGACTTTATAAATTGTTAAAGAGC 4972 >seq2664 Length=5510 Score = 86.0 bits (94), Expect = 2e-12 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 25685 CTTCTAAGCCGTAGGTCACTGGTTCGAATCCAGTAGGGCGTACCAATAAAATCAAGGGGT 25744 ||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| || Sbjct 5502 CTTCTAAGCCGTAGGTCACAGGTTCGAATCCTGTAGGGCGTACC-ATAAAATCAATAAGT 5444 Query 25745 TACG 25748 |||| Sbjct 5443 TACG 5440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127448465330272