Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq348 940 0.0 >seq348 Length=55286 Score = 940 bits (1042), Expect = 0.0 Identities = 632/715 (88%), Gaps = 0/715 (0%) Strand=Plus/Minus Query 25598 GTCTTCGCGATTGTTGCGTGGCGTGTTGACGGCGCGACTGACCCTGTACGCCTCCATGGA 25657 ||||||||| ||||| || |||||||| || | || ||||| || ||||||||||| | Sbjct 4586 GTCTTCGCGGTTGTTCCGCGGCGTGTTCACCGTCCGGCTGACTCTATACGCCTCCATCGC 4527 Query 25658 TGGAGGCGAGCTTGCCAGCAGCATCGCCATGGCATCGTCGGGGCTGGCGGCCATCCACTC 25717 || ||| ||| ||||||||||| ||||| || ||||| || ||||||||||||||||| Sbjct 4526 CGGCGGCTCGCTGGCCAGCAGCATGGCCATTGCGTCGTCTGGACTGGCGGCCATCCACTC 4467 Query 25718 ATCGATCTGGCCGACCTGCAGCCACACCGGCATGCGGTCGTGGATGTCGGCCGAGACGCC 25777 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 4466 ATCGATCTGACCGACCTGCAGCCACACCGGCATGCGGTCGTGGATGTCGGCCGACACGCC 4407 Query 25778 GCTGCTGTCGCCGGTGATGATGGTGAAGGTGCCCAAGTTGCCGTCGGGCAGCAGCGGGCT 25837 |||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 4406 GCTGCTATCGCCGGTGATGATGGTGAAGGTGCCCAGGTTGCCGTCGGGCAGCAGGGGGCT 4347 Query 25838 GGTGTCCTCCCACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATGAACCACGGGTC 25897 ||||||||||||||| |||||||||||||||||| Sbjct 4346 GGTGTCCTCCCACAGGCCGGCGGCCAGCAGCGGACCGGTGGCGTGGATGAACCACGGGTC 4287 Query 25898 CTTCTTTCCGTCCTCGGGGCTGACCGACCACTCGTAGTAGCCGGCCATGGGGATCACGCA 25957 ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 4286 TTTCTTCCCGTCCTCGGGGCTGACCGACCACTCGTAGTACCCGGCCATGGGGATCACGCA 4227 Query 25958 GCGGCGCTTCTTGAAGGCCGACCGGAAGGCTGGCTTGGTGGCCACCGTCTCGATCCGGGC 26017 |||||||||||||| |||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 4226 CCGGCGCTTCTTGAACGCCGACCGGAAGGCGGGCTTCGTGGCCACAGTCTCGATTCGGGC 4167 Query 26018 GTTGATGGTCGAGCCTTGCAGGCCCTTGGCCTTGGCCCAGAACGGCAGCAGGCCCCACGC 26077 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 4166 GTTGATGGTCGAGCCCTGCAGGCCCTTTGCCTTGGCCCAGAACGGCAGCAGACCCCACGC 4107 Query 26078 CAACCGGGTGACCTGCCGGCCTTCGCCCCGGTCTAGGATCACCGATGCGCGTTGCGTGGG 26137 | |||||||||||||||||||||||| || || ||||| | |||||||| ||||| || Sbjct 4106 TAGCCGGGTGACCTGCCGGCCTTCGCCGCGATCCAGGATTATTGATGCGCGCTGCGTCGG 4047 Query 26138 CGCGAGGTTGTAGCTGGGCTGGATCTCGGCCAGGCCGGGGGCAAGGTCAGCCAGCCCCGG 26197 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 4046 CGCGAGGTTGTAGCTGGGCTGGATCTCGGCCAGGCCCGGTGCAAGGTCAGCCAGCCCCGG 3987 Query 26198 CTGGCCGAAGTCGACAACGGGGAGCTGGACGAATCGGCCGCACATGGCCGGAGGGTAGCC 26257 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3986 CTGGCCGAAGTCGATCACGGGGAGCTGGACGAATCGGCCGCACATGGCCGGAGGGTAGCC 3927 Query 26258 CGGCCGGCCGTGCCCGGGGCGTGTAGGGACACCCCGACCCGACAGGGCGAGGTTG 26312 ||||| ||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 3926 CGGCCTGCCGTGCCCGGGGCGTGTAGGGACAACCCGACCCGACAGGGCGAGGCTG 3872 Score = 452 bits (500), Expect = 1e-122 Identities = 432/554 (78%), Gaps = 5/554 (1%) Strand=Plus/Minus Query 27974 TGTCGCAGCCCTTGCGACGCCAGGGCGTATCCTTCCATCCATGCGTCCCTCGAACGGCTA 28033 ||||||||| ||||||| | || ||||||||||| ||||| |||| | | || Sbjct 2232 TGTCGCAGCATCTGCGACGGCCGGCCGTATCCTTCCGGCCATGATCTCCTCCACC---TA 2176 Query 28034 CCAAGGCTTCCGCACCGCCCCGATCCCCTCTGGCTGGGTCCAGACCGGCGAGCGCTGGGC 28093 ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 2175 CCAAGGCTTCCGCACCGCCCCGATCCCGTCTGGCTGGGTCCAGACCGGGGAGCGCTGGGA 2116 Query 28094 GCTTTGGTACAACGGCCGCG-AGACGGCCAGCGTTACACCCGACGGCGGTCCTGGGGTCC 28152 || |||| ||||| ||| || || ||| | || || | ||| | ||| |||| Sbjct 2115 TCTGTGGTGGAACGGGCGCTCAGTCG-CCAATATCACTCCGGCTCCCGGCCGTGGTGTCC 2057 Query 28153 GGCTATGGATGGAAGGCCAGAAGATGTGGCAGGTGAAGGAAGTGCGCGCGGCCAACGTCC 28212 | || |||| | | ||||| | || ||| | || || |||| || Sbjct 2056 GCCTTCACTTGGATGCGCGAAAGATCTTCGAGACCAAGAAGGTCTTTGCCGCCAGTGTGT 1997 Query 28213 GGCAGGCGAAGCGGTACGCCGAGCGCTGGTGTGCGGCCAGGCTCTATCCCGATCTGCCAC 28272 |||| ||||| || || ||||||||||| ||||||||||| |||||||| ||||| | Sbjct 1996 CTCAGGGCAAGCGTTATGCAGAGCGCTGGTGCGCGGCCAGGCTGTATCCCGAGCTGCCGC 1937 Query 28273 TGCGCCAGGCAGTCGCCCGGCTGACCGACAGCACCCCGATCCAGCCCGAGCCGCCGCTGN 28332 |||| | || |||||||| |||||||||||||||||| ||||||| ||||||||| Sbjct 1936 TGCGTGAAGCCGTCGCCCGACTGACCGACAGCACCCCGCTCCAGCCGCCCCCGCCGCTGC 1877 Query 28333 NNNNNNNNNNNNCGACCCGCGAGCAGCAGCAACAGGCCCGGCGTCTGACCGAGGCTGGGG 28392 ||||||||||||||||||||||||| ||||||||| ||||||| || | Sbjct 1876 CCGGCCTGCCTTCGACCCGCGAGCAGCAGCAACAGGCTCGGCGTCTGGCCGAGGCAGGAG 1817 Query 28393 CGAAGGAGGTCGAGCGGATCAAGGCGGCGCTTGAACCGCGCAAGCCGCCGGCAGAGACGA 28452 ||||||||||||||||||||||||| || || |||||||||||||| ||||||||||| | Sbjct 1816 CGAAGGAGGTCGAGCGGATCAAGGCAGCACTCGAACCGCGCAAGCCACCGGCAGAGACTA 1757 Query 28453 AACCCCGAGCGAGGGACGTCCGCACCAAGGCGTGGGTGAGGGCAGGGCTGCAGCAGATGC 28512 | ||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||| Sbjct 1756 AGCCCCGAGCGCGGGACGTCCGCAGCAAGGCGTGGCTCAGGGCAGGGCTGCAGCAGATGC 1697 Query 28513 GGCGGGGCGTTTAG 28526 | || ||||| ||| Sbjct 1696 GCCGCGGCGTGTAG 1683 Score = 118 bits (130), Expect = 3e-22 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 34655 GAACCGGCCGGCGTCGATGCGAATCACCTGGTACTCAGGGAAAGCCTCA-TCAGGAAGCA 34713 ||| |||||| || |||| | ||| |||||| ||||||| | || || ||||| Sbjct 40577 GAATCGGCCGTGTTCCTTGCGCAGCACGCTGTACTC-GGGAAAGGCGCAGTCGGGAAGGC 40519 Query 34714 CTTCGCGCGCCTCCTCCATCAGTGCGACAAAGCGCGCCTGCCACTCGACCGGCATCGACT 34773 ||| |||||| ||||||| ||||| |||||| ||||||| || | |||||| |||| Sbjct 40518 GCTCGTACGCCTCGGCCATCAGGGCGACGAAGCGCTCCTGCCATTCCAGCGGCATGGACT 40459 Query 34774 GCAGGGTGCGTCGCGGCACCACGTGATAGGCGGCGCGGCTGGGGCCGAAGGCGTGCCAGA 34833 | || || | || || || || | || ||||||||| | ||||||| || | ||| | Sbjct 40458 GAAGCGTTCTGCGAGGAACGACCAGGTATGCGGCGCGGGTCAGGCCGAATGCATTCCACA 40399 Query 34834 CGGGGCCATCGGAATAG 34850 ||||||||||||| ||| Sbjct 40398 CGGGGCCATCGGAGTAG 40382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128792419620832