Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2252 127 2e-24 seq2162 114 1e-20 seq1739 98.7 9e-16 seq2318 96.9 3e-15 >seq2252 Length=1130325 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | |||| ||| | |||||| ||||| || || ||||| ||| Sbjct 562702 TCCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGA 562761 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || | ||| || ||||| ||||| ||| ||||||| ||||||||||| || || Sbjct 562762 CAGGGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGG 562821 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || ||||| || | | ||| | | || ||||| | ||| | |||||||| || ||| | Sbjct 562822 GATTCCCTCTTTAT-CTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAA 562880 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || ||||||| ||| || || ||||| ||||| Sbjct 562881 CTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCAT 562929 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| || ||||| ||| || ||||| ||||| Sbjct 562230 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCG 562289 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || ||||||||||| ||| ||| || |||| Sbjct 562290 GCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTTGCCTTG 562349 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||||| || |||||| || | ||| | || || ||||||| |||| Sbjct 562350 ACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTT 562409 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 562410 TTCACGAAGATCTGCAT 562426 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | |||| ||| | |||||| || || || || ||||| ||| Sbjct 563511 TCCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGA 563570 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || ||||| ||||| ||| |||||| |||||||| || || || Sbjct 563571 CAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGG 563630 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| || ||||| | |||| |||||| | ||||| Sbjct 563631 AATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGAC 563690 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || ||||||| ||| || || || || ||||| Sbjct 563691 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| |||| | |||||| ||| || ||||| ||||| Sbjct 563770 GTCGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTGCTTTCCG 563829 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||||||||||||||| ||||||||||||||| ||| || |||| Sbjct 563830 GCGAAGATCAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 563889 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| ||||| | ||||| |||| ||| | || || || || || || Sbjct 563890 ACGTTTTCGATAGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCCGTGAGGGTC 563949 Query 127097 TTTACAAAAATCTGCATG 127114 || || || || |||||| Sbjct 563950 TTGACGAAGATTTGCATG 563967 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| || | | ||||| ||| || | ||| ||||| Sbjct 562961 GTGGATTCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATCTTCCAACTGCTTTCCG 563020 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || || ||||||||||| ||| || |||| Sbjct 563021 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTG 563080 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||||| |||| ||| | || || || || || || Sbjct 563081 ACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCCGTGAGGGTC 563140 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 563141 TTGACAAAGATTTGCAT 563157 >seq2162 Length=74254 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| || || || || || ||||| |||| || ||||| ||| || ||||| ||||| Sbjct 48612 CGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCGAGCTGCTTTCC 48553 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||| |||| | || |||||| || ||||| ||||||||||||||| ||| ||| ||| Sbjct 48552 AGCGAAGATGAGTCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 48493 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | || ||| | || ||| || || | ||| | ||| ||||| || || || Sbjct 48492 CACGTTCTCAATGGAGTCTGAACCCTCAACCTCAAGGGTGATCGTCTTGCCCGTAAGCGT 48433 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 48432 CTTCACGAAGATTTGCAT 48415 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||| || || ||||| || || || || | || ||||| ||| || Sbjct 49079 ACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTGCGGCCATCCTCA 49020 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || || ||||| ||||||||||||||||||| || || || || || ||||| || Sbjct 49019 AGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCT-TG 48961 Query 127025 ATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | | | |||| || | ||||| | || | | ||||||||| | || | |||||| Sbjct 48960 AATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAATGTGATCGTTTT 48901 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || || || ||||||||||| Sbjct 48900 GCCCGTGAGGGTCTTCACGAAAATCTGCAT 48871 >seq1739 Length=92152 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || ||| |||||| |||||||| || || || || |||||||||||| ||| || Sbjct 77046 TTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 76987 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | |||| |||||| || |||||| || | || | ||| ||||||||| Sbjct 76986 GCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTC 76927 Query 127091 AGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || ||||| ||||||||| || Sbjct 76926 AGCGTCTTGACAAAGATCTGCATGCCT 76900 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | || |||||||| ||||| ||||| ||||||||| ||| ||| ||||| | Sbjct 76760 AGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACAT 76701 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| ||||| | ||||| || | ||| | || |||||||| ||||| || | Sbjct 76700 TCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 76641 Query 127101 CAAAAATCTGCAT 127113 | ||||||||||| Sbjct 76640 CGAAAATCTGCAT 76628 >seq2318 Length=474513 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||||| |||||||| || || || || |||||||| ||| ||| || ||||| | Sbjct 465012 AGATCAGGCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACAT 464953 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | |||||| |||| ||| | ||||||||||||| ||| || | Sbjct 464952 TCTCGATGGTGTCAGAGGCCTCGACCTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGA 464893 Query 127101 CAAAAATCTGCATGGC 127116 | |||||||||||||| Sbjct 464892 CGAAAATCTGCATGGC 464877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475483777071360