Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq2629 152 1e-32 seq2766 107 5e-19 >seq2629 Length=15125 Score = 152 bits (168), Expect = 1e-32 Identities = 238/340 (70%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 19022 ATGGCTAAACCAGCGCGAAGGAAATGCAAAATCTGTAAGGAATGGTTTCACCCAGCATTC 19081 |||||||| ||| |||| || |||||||| |||| || |||||||| || | | Sbjct 338 ATGGCTAACCCAAGGCGACGGCGCTGCAAAATATGTAGAGAGTGGTTTCATCCCAAGTAC 279 Query 19082 TCAAATCAGTGGTGGTGCTGCCCGGAACACGGAACTCAATTAGCACTAGAGCGACGAATC 19141 |||| |||||| |||| || |||||| | |||||||| | ||||||||| Sbjct 278 GAAAATATAGAGTGGTGTAGCCCAGAGCACGGAGCAGAATTAGCAATCAAGCGACGAAGT 219 Query 19142 AAAGAACGCGAAAAAGCGGAAA--AAGCAGCAGAGAAGAAACGACGACGAGAGGAACAGA 19199 || || | |||||| ||| || | ||| ||||| || | | | | ||| | Sbjct 218 AAGGAGAGAGAAAAACTAGAAGCCAAACTCAAGA-AAGAACAGAAG-CAAAAAGAAGTAA 161 Query 19200 NNNNNNNNNNTAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTA 19259 |||||| || || || | || |||| ||||||||||| ||||||| Sbjct 160 AAGCCCGCGATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTA 101 Query 19260 AACAAGCCCAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTG 19319 ||||||| ||||||||||| ||||| | ||||||||||||||||| || || ||||| Sbjct 100 AACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCA 41 Query 19320 TCTCGTGCGGAACGCTCACGTCTGCTCAGTGGGATGCCGG 19359 | || ||||||||| | ||||||||||||||||| || Sbjct 40 TATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 96.9 bits (106), Expect = 9e-16 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16515 GTCGATTACCTGACACTAATGACCGCTGAAAAGGCCGATCGTAACGACCTTGCTTACGGC 16574 || ||||| | || || |||| |||| || || || || ||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 16575 ATGATTACTAAGGGACTGAAGAACCTTTCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 16632 || || || || || ||| | || | |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 16633 TGACGCAGCTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGCGACT 16692 | || ||||| |||||| ||| ||| ||||||| || || || | |||||||| Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 16693 CCCGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTTGGTAT 16741 ||| ||||| || || || || |||||||||||||| ||| | || || Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 >seq2766 Length=35022 Score = 107 bits (118), Expect = 5e-19 Identities = 239/356 (67%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 21692 GAAGGTGTCAGATACAAACCATATAAGGACGTAGTCGGTGTGTTGACTGTGTGTTATGGC 21751 |||||||||| ||| || |||||| | || ||||| |||||| | || || |||| ||| Sbjct 26394 GAAGGTGTCAAATATAAGCCATATGAAGATGTAGTTGGTGTGCTCACGGTTTGTTTTGGG 26335 Query 21752 CACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCCCTC 21811 ||||| || | ||||| || || |||||| ||| | ||| | ||||| ||| | Sbjct 26334 CACACAGGCACTGACATTATCCCCACTAAAACTTATTCAGAATCTGAATGTTTAGCTTTG 26275 Query 21812 CTGAATAAAGACCTTATCACTGTCGCCAGACAAAT--TA-ACCCGTACATCAAAGTAGAT 21868 || | |||||||| | || ||| ||| | || |||| || ||||| ||| Sbjct 26274 CTTGAAAAAGACCTCAGCAAAGTC---AGAAAGGGCGTAGACCCTCTAATTAAAGTCGAT 26218 Query 21869 ATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAATGTGGGCGCAGGCAAT 21928 || || | || |||| |||| |||| || || | |||||| || ||| |||| | Sbjct 26217 ATTGACGATAACACCCGCGCCGCTATTTATTCCTTTGCTTACAACGTAGGCACAGGTGCT 26158 Query 21929 TTCAGAACATCGACGCTTCTTCGCAAAATCAATCAGGGTGATATCAAAGGTGCATGTGAT 21988 || || ||| | || ||| | ||| ||||||||| ||||| || || Sbjct 26157 TTTGCTCGTTCTACGATGCTGAAGAAACTGAATGCAGGTGATATCGCTGGTGCTTGCAAT 26098 Query 21989 CAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGCCTGATGACTCG 22044 | || |||||||| || || || ||||| | ||||||||||| || || || Sbjct 26097 GAATTAAAACGCTGGACTTATGCAGGGGGTAAAGAGTGGAAAGGCCTAATAACACG 26042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134085039612704