Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq2664 565 7e-157 seq2629 178 4e-40 seq2669 158 3e-34 seq2561 134 4e-27 >seq2664 Length=5510 Score = 565 bits (626), Expect = 7e-157 Identities = 978/1406 (70%), Gaps = 24/1406 (2%) Strand=Plus/Minus Query 35095 CCGTACAAACGCGATGGTGAGTTGTTGCAGGTCAAGAGAATCAGCACCGAACGTCCGGAC 35154 || |||||||| | || || |||||||||||||| | ||||| || | ||||| | Sbjct 1900 CCCTACAAACGGAACGGGGAACTGTTGCAGGTCAAGCGCATCAGTACGGTGCGTCCCAAG 1841 Query 35155 GGGAAGAAAGTCATCATGGCAGAAGGTGACTGTGAACCCTGTCTGTTCGGATGGCAGGCT 35214 || || ||||| || ||||| |||| ||||||||||| ||||| || |||||||| Sbjct 1840 GGTAAAAAAGTGATGATGGCGGAAGCCCGGTGTGAACCCTGCCTGTTTGGCTGGCAGGCA 1781 Query 35215 CT--CGAT-GCTGGCGTGAG-GGCGGTTGTGCTTTGCGAAGGCGAAATTGATTGCATGAG 35270 | ||| |||| | ||| || | || || || ||||| || || || ||| |||| Sbjct 1780 ATACCGAACGCTGTCC-GAGTGGTGATTTTG---TGTGAAGGGGAGATCGACTGCCTGAG 1725 Query 35271 CTATGCGCAATACGGAATTCCGGCGCTATCTGTCCCGTTCGGTGGCGGGAAAGGCGCTAA 35330 ||| || ||||| | ||||| || ||||| |||||||| || || || || || || Sbjct 1724 TTATCACCAGTACGGTTTGCCGGCCCTGTCTGTGCCGTTCGGGGGTGGTAAGGGGGCCAA 1665 Query 35331 GCAACAGTGGATTGAGTTTGAATACCATAACCTCGACAGGTTTGAAGAAATATTCATTTC 35390 || ||||||||||||||||||||||| || || || | ||||| ||||| | ||||| Sbjct 1664 ACAGCAGTGGATTGAGTTTGAATACCACAATCTGGATCGCTTTGAGGAAATTTGGATTTC 1605 Query 35391 GATGGACGGTGATGATGTTGGTCGTGAAGCTGCAAGGGAAATCGCAAGCCGACTCGGTGA 35450 ||||| ||||| || || || || || || | || || || ||||| | || | Sbjct 1604 CATGGATAACGATGACGTGGGGCGGGAGGCGGCCAAAGAGATTGCCAGCCGGTTAGGGGC 1545 Query 35451 ACATCGCTGCCGTCTGGTTACACTGCCGCACAAAGATATCAACGAATGCCTGATGAACGG 35510 |||||||||||| | || | |||||| |||| |||||||| |||| | | || Sbjct 1544 ACATCGCTGCCGGTTAGTCAGCCTGCCGTACAAGGATATCAA----TGCCGGTTTGCAGG 1489 Query 35511 CGTCGCTGA----GGATGAAATCTGGCAGTACATCGGTACAGCGTCATATTTCGACCCCG 35566 || ||| |||||| | || | | | | || || | | ||| ||||| | Sbjct 1488 CGGGCATGACACCGGATGAGGTGGTGCGTTGCCTTGAAACGGCAGCCTTTTTTGACCCGG 1429 Query 35567 AAGAGCTTTACAGCGCCCGTGAGTTTTATCAGGACACCATCAATGCTTTCTACGGCAAGC 35626 ||||| | | ||| ||||| ||||||||||||||||| || | || |||||||| || Sbjct 1428 AAGAGTTGTGCAGTGCCCGCGAGTTTTATCAGGACACGATTGAGGCGTTCTACGGTCAGG 1369 Query 35627 AGCAGTATCTGTTTAACCCACCGTGGGAAACGCTGGCTTACAACTTCCAGTTCCGTGAGG 35686 || | ||||||| | |||||||||| | |||| | | ||| ||||| || Sbjct 1368 CCCACTGCCTGTTTACCACACCGTGGGACAGGCTGAATCCGCATTTCAGTTTCCGCGAAT 1309 Query 35687 CGGAGTTAACGCTTGTCAATGGCGTGAACGGTCACGGAAAAACGGAGGTTGTCGGGCATA 35746 | ||| | ||| | ||||||| || ||||| |||||||||| ||| | |||||||| Sbjct 1308 CAGAGCTGACGGTGCTCAATGGGGTCAACGGGCACGGAAAAAGTGAGATGGTCGGGCACC 1249 Query 35747 TGGCACTTGAGGCCATGAGACAGGGGATAAAAACATGCGTCGCATCGCTTGAACTGAAGC 35806 || ||| || ||| | ||||| || | || || || || |||| ||||||| Sbjct 1248 TGCTGTGTGAAGCGATGGGGCAGGGCATCCGGGCCTGTGTGGCCTCTTTTGAGCTGAAGC 1189 Query 35807 CCGGGATTCTGCTTAAACGCCTGACCCGGCAGTCTACATGTTGCAAAATGCCGCCAGTTC 35866 | || | || || || ||||||| |||| | | || | ||| |||||| || Sbjct 1188 CGGGACAGTTACTGAAGCGGCTGACCCAGCAGGCGGCTTGCTCGGAAAGGCCGCCGGTGG 1129 Query 35867 TGGAAATCGAATCAGCATTTAAGTTTTACGATGACCGGCTCTGGTTATTTGGCCTGACAG 35926 |||||||| | |||||| ||||||||||||| ||||| ||| | ||||||||||| | Sbjct 1128 CAGAAATCGAGGCCGCATTTCAGTTTTACGATGATCGGCTGTGGGTTTTTGGCCTGACGG 1069 Query 35927 GTACGGCCAAGGCGGAACGCCTGATTGAAATTTTCACATATGC-CAGACGGCGATACGGC 35985 | ||||| || || | || ||||||| || |||| ||||| ||| || || ||||| Sbjct 1068 GAACGGCAAAAGCCGCGCGGGTGATTGAGATCTTCAGCTATGCGCAG-CGTCGTTACGGT 1010 Query 35986 ATCCAGTTATTCATCATCGACAGCCTCATGAAGTGCGGGATTGGCGATGACGATTACAAC 36045 || ||| | || | ||||||||||| ||||| ||||| || || || || ||||||||| Sbjct 1009 ATTCAGCTGTTTGTTATCGACAGCCTGATGAAATGCGGTATCGGGGAGGATGATTACAAC 950 Query 36046 GGGCAAAAGGCGTTTGTTGACGCGCTGTGCGACTTCAAGAATAAAACCAACTCTCACATT 36105 ||||| || || ||||| || || ||||| |||||||| || ||| | || | Sbjct 949 GGGCAGAAAGCCTTTGTGGATGCCCTGTGTGACTTCAAAAACCGTACCCGCAGCCATGTG 890 Query 36106 ATCCTCGTCACTCACTCCAGAAAGGGAGACAGCGAGGAGAAACCTACCGGAAAGATGGAC 36165 ||||| || || ||| |||| || ||||| |||||| ||| || || || ||||| Sbjct 889 ATCCTGGTGACCCACAGTCGAAAAGGGGACAGTGAGGAGCGACCGACGGGGAAAATGGAT 830 Query 36166 GTAAAAGGCTCAGGAGCGATTACAGACCTGACAGATAACCTATTTATCATCTGGCGCAAT 36225 || |||||| | || |||||||| |||||||| || || | | || |||||||||||| Sbjct 829 GTCAAAGGCACCGGGGCGATTACTGACCTGACCGACAATTTGATGATTATCTGGCGCAAT 770 Query 36226 AAAGCTCGCGAGAGAGCGTTAC-AGCGC-GTTCAGGCTGGCGAGCAAATTAAC-GAGAAA 36282 ||||| || ||| | | ||| | | || | || | || | | ||||| || || Sbjct 769 AAAGCCCGTGAGCGTGTGTTGCAAAAGCAGGACA--CCGGAG-CCGGGTTAACGGAAAAG 713 Query 36283 GACCAGCAACTTCTTGCTGCGCCCGCATCTGTTTTAATGCTTGAGAAGCAGCGAAACGGG 36342 || | | || || || | || || | | | || ||||||| ||||| ||||| Sbjct 712 GAACGGGAAAAACTGGCCGATCCGGCGGCCATGGTGTTGATTGAGAAACAGCGGAACGGC 653 Query 36343 GAAGGGTGGGAAGGCGGTGTGCCGTTATTTCTTGACGAGCAGTCTCACCAGTTCCTGCAA 36402 | || ||||| |||||| | | | | ||| ||| | | || || ||||| ||| Sbjct 652 AACGGCTGGGAGGGCGGTATCGGGCTGTATCTGGACAAAAAATCCCATCAGTTTTTGCCG 593 Query 36403 ATGGAAGGTGCGTCACCATACAACTACATAGCTAACATGCCGAAGTCGGAGTATGACGAA 36462 |||| | || || || |||| || || || |||||| || |||||||||||| Sbjct 592 CAGGAACGGGCTGATCCCTATCACTATATTGCCAATATGCCGGCCTCTGAGTATGACGAA 533 Query 36463 GTGTGGAGGCAGGAGAATGTTACGGA 36488 ||||||| | | |||||||| || Sbjct 532 GTGTGGAAGAGACAAAATGTTACCGA 507 Score = 96.9 bits (106), Expect = 1e-15 Identities = 181/262 (69%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 34673 ACCTGTTGCCAAACGGCAAGAAAGATGGGCATGAGTGGGTTGCCGGCAACGTCAACGGTG 34732 ||||| |||| |||| || | |||||||||||||||| ||| |||||||| | Sbjct 2328 ACCTGCTGCCGGACGGACGCAAGGCCGGGCATGAGTGGGTTGTCGGATCGGTCAACGGGG 2269 Query 34733 ACAAGGGGAACAGCCTTAAGGTTAACCTTAGCGGTAAGAAAAAATGGGCTGATTTCGCTG 34792 | || |||||||| || |||| | ||| |||||| ||| | || || |||| Sbjct 2268 AAGCCGGCAACAGCCTGAAAATTAATTTGTCCGGCAAGAAAGTCTGGTCCGACTTTGCTG 2209 Query 34793 AGGGCGACGGCGGTGACATGCTTGATTTGTGGATGGCCTGTCGGGGAAT-AAATCTGCAT 34851 | ||| |||||| || || | ||||||||| | || || | || | |||||| Sbjct 2208 AAGGCACCGGCGGGGATCTGTTGGATTTGTGGGT-GCAGGTGCGTGATTGTGGGCTGCAT 2150 Query 34852 CAGGCTATGCAGGAGGCAAAGGCATTTCTCGGTATCAAGGATGATGATCACCATTTCGAC 34911 ||||| ||| ||||||||| ||||| || || ||||| |||| |||||| | | Sbjct 2149 CAGGCCATGACGGAGGCAAAACAGTTTCTGGGGATTGCCGATGACGATCGCCATTTTGCC 2090 Query 34912 GCCAGACGTGAGAAGAAATTTT 34933 |||| || || || ||| ||| Sbjct 2089 GCCAAAC-AGACAAAAAACTTT 2069 >seq2629 Length=15125 Score = 178 bits (196), Expect = 4e-40 Identities = 342/499 (69%), Gaps = 14/499 (3%) Strand=Plus/Minus Query 27448 AATGGTATATCAT---CATCAAAATCCATCGGTGGCTCGTTATGTTGTGTTGGTGATGGT 27504 |||||||| || | |||| |||||||||| ||||| || || ||| | |||| || Sbjct 12708 AATGGTATTTCTTGGTCATCCCAATCCATCGGCGGCTCATTCTGCGGTGCTTGTGACTGT 12649 Query 27505 TGCTGCTGTGGTTTCTGTGACTGCCTGTCGGCTGCTTGT-TGTTTGCTGTCGCCAGTGCC 27563 | ||||| |||| | | ||| || |||| | || || |||| |||| | || Sbjct 12648 GGTTGCTGAGGTTGTCGCG-CTGGTTGCTGGCTTCCTGCCTGATTGC---CGCCGTTACC 12593 Query 27564 TCCAAGCATTTGCAT---CACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTC 27620 || ||||||||||| | | || || || | || | || || ||||| ||||| Sbjct 12592 ACCTAGCATTTGCATTGACCCGCCGATATTTACTACC---ACTTCCGTTGTGTATCGGTC 12536 Query 27621 TTGCCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCCTCGAAATAAACCTGATC 27680 ||| || | ||||||||||| || | ||| ||| || |||| || ||||| Sbjct 12535 TTGACCGCTTTGGTCTTGCCATTTACGCGTTTGCAGAGAGCCTTCGATGTATACCTGGCT 12476 Query 27681 ACCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCAACTACGGCAACACGATG 27740 |||||||||| ||| | ||| | |||||||| | || || | | | || ||||| Sbjct 12475 TCCTTTTTTCAGATATTCGCCTGCAACTTCAGCTAACTTGCCGAAAATTACCACTCGATG 12416 Query 27741 CCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGCCACTGCTCTGATGTAGC 27800 |||||| || | ||| ||| || | ||||| || |||||| || ||||| || Sbjct 12415 CCATTCGGTTTTCTCGCGCATTTCACCCGATTGTTTGTCACGCCACGATTCCGATGTGGC 12356 Query 27801 GACTGTCAGGTTAGCGAACGCCGTCCCTGATGGTGAATAACGAACCTCCGGGTCTTGCCC 27860 | ||| || || || | || ||||| ||| || |||| || |||||||| || Sbjct 12355 TAGTGTGAGATTTGCTACTGCTCCCCCTGCTGGCATGTATCGAATTTCAGGGTCTTGGCC 12296 Query 27861 GACCCGGCCTAAGATGATCACCTTATTTACGCCTCTACTAGCCATTTATGCCGCCTGTTT 27920 | | |||| || ||| ||||| ||||||||| ||||||||||||| || |||| ||| Sbjct 12295 TAAGTGACCTATGAGGATTACCTTGTTTACGCCTTTACTAGCCATTTACGCTGCCTCTTT 12236 Query 27921 TAGTTCTTTAACTCTGATG 27939 |||||||||| |||||| Sbjct 12235 AAGTTCTTTAATCCTGATG 12217 >seq2669 Length=6002 Score = 158 bits (174), Expect = 3e-34 Identities = 238/336 (71%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 14644 TGGGTGCGCAACTATTGTTGGTGATGAAACGCAACTTGTGCAAGTGAACAGCAATCCTTC 14703 ||| || |||||||| || ||||| | || || ||||| ||| | || ||| | ||||| Sbjct 3222 TGGCTGTGCAACTATCGTCGGTGAAAAGACTCAGCTTGTCCAAATTAATAGCCAGCCTTC 3281 Query 14704 TGGCGC-GAGCTTTAAGGTAAAAGATGAGTCAGGTGTGATTGTTGCGCAAGGTAAGACCC 14762 |||||| || ||| | | |||||||| | || | || | | ||||| |||| Sbjct 3282 TGGCGCAGAATTTTCAA-TCAAAGATGAAACCGGGCAGGAAATTACCCGTGGTAATACCC 3340 Query 14763 CACAAGGTGTAACGCTCGCCAAGTCAGATGGTAGCTATTTTGGCAAAAAGAGCTACCAGA 14822 ||||| |||||| ||| || || ||||| ||| ||||||||| || | || || | Sbjct 3341 CACAAAGTGTAATGCTGGCAAAATCAGACGGTCACTATTTTGGTGGTAAAAAATATCAAA 3400 Query 14823 TCACTATGGAGAAGGATGGGTATGAACCAGTTACCCTGCCAATCAAAGCCAATGCTAATG 14882 |||| | || || | || | |||||||||||| | || || || |||| Sbjct 3401 TCACCTTCACAAAAGAAAATTTCCAATCTGTTACCCTGCCATTAGTCGCAAAAGCAAATG 3460 Query 14883 GTTGGTATATTGGTGGGAACCTTGTGTTTGGTGGGTTAATTGGTTGGCTTGCTGTAGATC 14942 | |||||||| || ||||| | || |||||||| |||||||| ||| | ||||| || | Sbjct 3461 GGTGGTATATCGGCGGGAATTTAGTCTTTGGTGGTTTAATTGGCTGGTTGGCTGTTGACC 3520 Query 14943 CATTTAATGGTGGAATGTATACCTTGAAGCCAAAAG 14978 | || |||||||| |||||||| || | ||||||| Sbjct 3521 CTTTCAATGGTGGTATGTATACACTGCATCCAAAAG 3556 >seq2561 Length=11062 Score = 134 bits (148), Expect = 4e-27 Identities = 200/281 (71%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 15696 TTGCATATGTTGCGATGAAGCCAATCGTTGAAAACCTTGGAATGAGCTGGTCAACGCAGC 15755 ||| ||||||||| |||| || | ||| ||||| | || || ||| | ||| | Sbjct 10942 TTGAATATGTTGCAATGAGATCAGTGGTTAAAAACATCGGTCTGGATTGGACCGGGCAAC 10883 Query 15756 AAACAAAACTCA-TGAAGCAGATTAGCAAATTCAACTGTGTTCATATGAACATGGTTGCC 15814 | | |||||||| | | | | || |||||||||||| ||||| | |||||| Sbjct 10882 AGAAAAAACTCAATTCACAAAAAGAG-AAATTCAACTGTAGACATATCTCTACGGTTGCT 10824 Query 15815 GCTGATGGTAAGCTTCGTAAGCTACTCTGCCTTCCTTTGAAGAAGTTAAATGGATGGCTG 15874 ||||||| || |||| ||| | || |||| |||| || | ||||| |||||| Sbjct 10823 CCTGATGGCAAAACTCGTGAGCATTTATGTATTCCGCTGAAAAAACTTAATGGCTGGCTG 10764 Query 15875 TTCAGCATCAACCCTGAGAAAGTTCGTGCTGACATCCGTGATAAACTGATTCAGTACCAG 15934 ||||| || ||||| | ||||||| || ||| || ||||||| | |||||| ||| Sbjct 10763 TTCAGTATTAACCCCGCGAAAGTTAAAGCAAGCATTCGCAATAAACTCACTCAGTATCAG 10704 Query 15935 GAAGAATGCTTTACTGTGCTGCATGACTACTGGACGAAGGG 15975 |||||||| |||| || ||||||||||| ||||| ||||| Sbjct 10703 GAAGAATGTTTTATTGCCCTGCATGACTATTGGACCAAGGG 10663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137524922618304