Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2252 122 8e-23 seq2162 100 3e-16 seq1889 95.1 1e-14 >seq2252 Length=1130325 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | | || ||||| ||||| ||||| || ||||| || || ||| Sbjct 562700 ATTCCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCG 562759 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || ||||| ||| | ||||| || ||||| || || Sbjct 562760 GACAGGGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGG 562819 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || |||||||||||||| ||| |||| ||| | |||||| ||| ||| Sbjct 562820 GGGATTCCCTCTTTATCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCA 562879 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || || ||||| | ||| || || ||||||||||| Sbjct 562880 ACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCAT 562929 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || |||||||| ||||| || || ||| Sbjct 563156 ATACCACCACGGAGACGAAGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCG 563215 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||| || ||||| ||| | ||||| || |||||||| || Sbjct 563216 GACAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGG 563275 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||||||||| || || || | ||| | || || || |||| Sbjct 563276 GGAATTCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATAGTATCAGATCCCTCG 563335 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || ||||| | ||| || || || |||||||| Sbjct 563336 ACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 >seq2162 Length=74254 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| |||||||||||||| ||||| || || | || ||| || | ||| Sbjct 49073 TGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTGCGGCCATCCTCAAGTTGC 49014 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||||||| ||||| || || || || |||||||| |||||||| || Sbjct 49013 TTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTTA 48954 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | | || || ||||||||| | || | ||||||||| || Sbjct 48953 GCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAATGTGATCGTTTTGCCCGTG 48894 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| ||||| Sbjct 48893 AGGGTCTTCACGAAAATCTGCAT 48871 >seq1889 Length=309471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGA 123663 ||||||| ||||| || |||||||||||||| |||||||||||| | || | || ||| Sbjct 14742 TCGAAACTGGAACTCCTTACATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAACCAGC 14683 Query 123664 GCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATG 123723 ||| ||||||| || || || || || ||| | || || || | ||| | Sbjct 14682 AGAACCTGGGAACGATCAAGTGCTCCAACCTGTGCACTGAGATCGTCCAGTACTCGTCTC 14623 Query 123724 CCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCGTC 123776 |||| |||| |||||||| || || ||||||| ||||| |||| || | |||| Sbjct 14622 CCGACGAAGTCGCCGTGTGCAACTTAGCTTCGA-TTGCGTTGAACCGATTCGTC 14570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451987018285440