Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq1458 93.3 1e-14 >seq1458 Length=11418 Score = 93.3 bits (102), Expect = 1e-14 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 8848 GCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCG 8907 || |||||||| || | || ||| | ||||| ||| | | || || | | ||| Sbjct 1589 GCAGAAATATCCCGTTCCCTTAAAGCGTTGGCGAAAGAATTACAGGTGCCTGTTGTAGCG 1648 Query 8908 CTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGAT 8967 || || |||||||| || | || ||| | || | | || || || || | || ||| Sbjct 1649 CTCTCCCAGCTTAACCGTAGTCTGGAGCAGCGGGCTGATAAACGTCCGGTTAACTCTGAT 1708 Query 8968 CTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGAT 9027 ||||| || || || | || ||||||||||| ||| | ||| | |||||||| || ||| Sbjct 1709 CTGCGTGAATCAGGCTCTATTGAGCAGGATGCTGACTTAATCATGTTTATCTATCGTGAT 1768 Query 9028 GAGGTCTATAACCCCGACAGCG--CAGATCGCGGTACGGCCGAAATCATCATTGCGAAGC 9085 ||||| ||| || |||| | | || | ||| || ||||| ||| ||| || | Sbjct 1769 GAGGTGTATCACGATAACAGTGAACTGAAAGGTGTA--GCAGAAATTATCCTTGGTAAAC 1826 Query 9086 AGCGAAACGGGCCGATTGGCACCGTACGGCTCGCATT 9122 |||| || || || || || || ||| |||| |||| Sbjct 1827 AGCGTAATGGCCCAATCGGTACAGTAAGGCTGACATT 1863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127541262174144