Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq2664 565 6e-157 seq2629 178 3e-40 >seq2664 Length=5510 Score = 565 bits (626), Expect = 6e-157 Identities = 978/1406 (70%), Gaps = 24/1406 (2%) Strand=Plus/Minus Query 33054 CCGTACAAACGCGATGGTGAGTTGTTGCAGGTCAAGAGAATCAGCACCGAACGTCCGGAC 33113 || |||||||| | || || |||||||||||||| | ||||| || | ||||| | Sbjct 1900 CCCTACAAACGGAACGGGGAACTGTTGCAGGTCAAGCGCATCAGTACGGTGCGTCCCAAG 1841 Query 33114 GGGAAGAAAGTCATCATGGCAGAAGGTGACTGTGAACCCTGTCTGTTCGGATGGCAGGCT 33173 || || ||||| || ||||| |||| ||||||||||| ||||| || |||||||| Sbjct 1840 GGTAAAAAAGTGATGATGGCGGAAGCCCGGTGTGAACCCTGCCTGTTTGGCTGGCAGGCA 1781 Query 33174 CT--CGAT-GCTGGCGTGAG-GGCGGTTGTGCTTTGCGAAGGCGAAATTGATTGCATGAG 33229 | ||| |||| | ||| || | || || || ||||| || || || ||| |||| Sbjct 1780 ATACCGAACGCTGTCC-GAGTGGTGATTTTG---TGTGAAGGGGAGATCGACTGCCTGAG 1725 Query 33230 CTATGCGCAATACGGAATTCCGGCGCTATCTGTCCCGTTCGGTGGCGGGAAAGGCGCTAA 33289 ||| || ||||| | ||||| || ||||| |||||||| || || || || || || Sbjct 1724 TTATCACCAGTACGGTTTGCCGGCCCTGTCTGTGCCGTTCGGGGGTGGTAAGGGGGCCAA 1665 Query 33290 GCAACAGTGGATTGAGTTTGAATACCATAACCTCGACAGGTTTGAAGAAATATTCATTTC 33349 || ||||||||||||||||||||||| || || || | ||||| ||||| | ||||| Sbjct 1664 ACAGCAGTGGATTGAGTTTGAATACCACAATCTGGATCGCTTTGAGGAAATTTGGATTTC 1605 Query 33350 GATGGACGGTGATGATGTTGGTCGTGAAGCTGCAAGGGAAATCGCAAGCCGACTCGGTGA 33409 ||||| ||||| || || || || || || | || || || ||||| | || | Sbjct 1604 CATGGATAACGATGACGTGGGGCGGGAGGCGGCCAAAGAGATTGCCAGCCGGTTAGGGGC 1545 Query 33410 ACATCGCTGCCGTCTGGTTACACTGCCGCACAAAGATATCAACGAATGCCTGATGAACGG 33469 |||||||||||| | || | |||||| |||| |||||||| |||| | | || Sbjct 1544 ACATCGCTGCCGGTTAGTCAGCCTGCCGTACAAGGATATCAA----TGCCGGTTTGCAGG 1489 Query 33470 CGTCGCTGA----GGATGAAATCTGGCAGTACATCGGTACAGCGTCATATTTCGACCCCG 33525 || ||| |||||| | || | | | | || || | | ||| ||||| | Sbjct 1488 CGGGCATGACACCGGATGAGGTGGTGCGTTGCCTTGAAACGGCAGCCTTTTTTGACCCGG 1429 Query 33526 AAGAGCTTTACAGCGCCCGTGAGTTTTATCAGGACACCATCAATGCTTTCTACGGCAAGC 33585 ||||| | | ||| ||||| ||||||||||||||||| || | || |||||||| || Sbjct 1428 AAGAGTTGTGCAGTGCCCGCGAGTTTTATCAGGACACGATTGAGGCGTTCTACGGTCAGG 1369 Query 33586 AGCAGTATCTGTTTAACCCACCGTGGGAAACGCTGGCTTACAACTTCCAGTTCCGTGAGG 33645 || | ||||||| | |||||||||| | |||| | | ||| ||||| || Sbjct 1368 CCCACTGCCTGTTTACCACACCGTGGGACAGGCTGAATCCGCATTTCAGTTTCCGCGAAT 1309 Query 33646 CGGAGTTAACGCTTGTCAATGGCGTGAACGGTCACGGAAAAACGGAGGTTGTCGGGCATA 33705 | ||| | ||| | ||||||| || ||||| |||||||||| ||| | |||||||| Sbjct 1308 CAGAGCTGACGGTGCTCAATGGGGTCAACGGGCACGGAAAAAGTGAGATGGTCGGGCACC 1249 Query 33706 TGGCACTTGAGGCCATGAGACAGGGGATAAAAACATGCGTCGCATCGCTTGAACTGAAGC 33765 || ||| || ||| | ||||| || | || || || || |||| ||||||| Sbjct 1248 TGCTGTGTGAAGCGATGGGGCAGGGCATCCGGGCCTGTGTGGCCTCTTTTGAGCTGAAGC 1189 Query 33766 CCGGGATTCTGCTTAAACGCCTGACCCGGCAGTCTACATGTTGCAAAATGCCGCCAGTTC 33825 | || | || || || ||||||| |||| | | || | ||| |||||| || Sbjct 1188 CGGGACAGTTACTGAAGCGGCTGACCCAGCAGGCGGCTTGCTCGGAAAGGCCGCCGGTGG 1129 Query 33826 TGGAAATCGAATCAGCATTTAAGTTTTACGATGACCGGCTCTGGTTATTTGGCCTGACAG 33885 |||||||| | |||||| ||||||||||||| ||||| ||| | ||||||||||| | Sbjct 1128 CAGAAATCGAGGCCGCATTTCAGTTTTACGATGATCGGCTGTGGGTTTTTGGCCTGACGG 1069 Query 33886 GTACGGCCAAGGCGGAACGCCTGATTGAAATTTTCACATATGC-CAGACGGCGATACGGC 33944 | ||||| || || | || ||||||| || |||| ||||| ||| || || ||||| Sbjct 1068 GAACGGCAAAAGCCGCGCGGGTGATTGAGATCTTCAGCTATGCGCAG-CGTCGTTACGGT 1010 Query 33945 ATCCAGTTATTCATCATCGACAGCCTCATGAAGTGCGGGATTGGCGATGACGATTACAAC 34004 || ||| | || | ||||||||||| ||||| ||||| || || || || ||||||||| Sbjct 1009 ATTCAGCTGTTTGTTATCGACAGCCTGATGAAATGCGGTATCGGGGAGGATGATTACAAC 950 Query 34005 GGGCAAAAGGCGTTTGTTGACGCGCTGTGCGACTTCAAGAATAAAACCAACTCTCACATT 34064 ||||| || || ||||| || || ||||| |||||||| || ||| | || | Sbjct 949 GGGCAGAAAGCCTTTGTGGATGCCCTGTGTGACTTCAAAAACCGTACCCGCAGCCATGTG 890 Query 34065 ATCCTCGTCACTCACTCCAGAAAGGGAGACAGCGAGGAGAAACCTACCGGAAAGATGGAC 34124 ||||| || || ||| |||| || ||||| |||||| ||| || || || ||||| Sbjct 889 ATCCTGGTGACCCACAGTCGAAAAGGGGACAGTGAGGAGCGACCGACGGGGAAAATGGAT 830 Query 34125 GTAAAAGGCTCAGGAGCGATTACAGACCTGACAGATAACCTATTTATCATCTGGCGCAAT 34184 || |||||| | || |||||||| |||||||| || || | | || |||||||||||| Sbjct 829 GTCAAAGGCACCGGGGCGATTACTGACCTGACCGACAATTTGATGATTATCTGGCGCAAT 770 Query 34185 AAAGCTCGCGAGAGAGCGTTAC-AGCGC-GTTCAGGCTGGCGAGCAAATTAAC-GAGAAA 34241 ||||| || ||| | | ||| | | || | || | || | | ||||| || || Sbjct 769 AAAGCCCGTGAGCGTGTGTTGCAAAAGCAGGACA--CCGGAG-CCGGGTTAACGGAAAAG 713 Query 34242 GACCAGCAACTTCTTGCTGCGCCCGCATCTGTTTTAATGCTTGAGAAGCAGCGAAACGGG 34301 || | | || || || | || || | | | || ||||||| ||||| ||||| Sbjct 712 GAACGGGAAAAACTGGCCGATCCGGCGGCCATGGTGTTGATTGAGAAACAGCGGAACGGC 653 Query 34302 GAAGGGTGGGAAGGCGGTGTGCCGTTATTTCTTGACGAGCAGTCTCACCAGTTCCTGCAA 34361 | || ||||| |||||| | | | | ||| ||| | | || || ||||| ||| Sbjct 652 AACGGCTGGGAGGGCGGTATCGGGCTGTATCTGGACAAAAAATCCCATCAGTTTTTGCCG 593 Query 34362 ATGGAAGGTGCGTCACCATACAACTACATAGCTAACATGCCGAAGTCGGAGTATGACGAA 34421 |||| | || || || |||| || || || |||||| || |||||||||||| Sbjct 592 CAGGAACGGGCTGATCCCTATCACTATATTGCCAATATGCCGGCCTCTGAGTATGACGAA 533 Query 34422 GTGTGGAGGCAGGAGAATGTTACGGA 34447 ||||||| | | |||||||| || Sbjct 532 GTGTGGAAGAGACAAAATGTTACCGA 507 Score = 93.3 bits (102), Expect = 1e-14 Identities = 180/262 (69%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 32632 ACCTGTTGCCAAACGGCAAGAAAGATGGGCATGAGTGGATTGCCGGCAACGTCAACGGTG 32691 ||||| |||| |||| || | |||||||||||| ||| ||| |||||||| | Sbjct 2328 ACCTGCTGCCGGACGGACGCAAGGCCGGGCATGAGTGGGTTGTCGGATCGGTCAACGGGG 2269 Query 32692 ACAAGGGGAACAGCCTTAAGGTTAACCTTAGCGGTAAGAAAAAATGGGCTGATTTCGCTG 32751 | || |||||||| || |||| | ||| |||||| ||| | || || |||| Sbjct 2268 AAGCCGGCAACAGCCTGAAAATTAATTTGTCCGGCAAGAAAGTCTGGTCCGACTTTGCTG 2209 Query 32752 AGGGCGACGGCGGTGACATGCTTGATTTGTGGATGGCCTGTCGGGGAAT-AAATCTGCAT 32810 | ||| |||||| || || | ||||||||| | || || | || | |||||| Sbjct 2208 AAGGCACCGGCGGGGATCTGTTGGATTTGTGGGT-GCAGGTGCGTGATTGTGGGCTGCAT 2150 Query 32811 CAGGCTATGCAGGAGGCAAAGGCATTTCTCGGTATCAAGGATGATGATCACCATTTCGAC 32870 ||||| ||| ||||||||| ||||| || || ||||| |||| |||||| | | Sbjct 2149 CAGGCCATGACGGAGGCAAAACAGTTTCTGGGGATTGCCGATGACGATCGCCATTTTGCC 2090 Query 32871 GCCAGACGTGAGAAGAAATTTT 32892 |||| || || || ||| ||| Sbjct 2089 GCCAAAC-AGACAAAAAACTTT 2069 >seq2629 Length=15125 Score = 178 bits (196), Expect = 3e-40 Identities = 342/499 (69%), Gaps = 14/499 (3%) Strand=Plus/Minus Query 25332 AATGGTATATCAT---CATCAAAATCCATCGGTGGCTCGTTATGTTGTGTTGGTGATGGT 25388 |||||||| || | |||| |||||||||| ||||| || || ||| | |||| || Sbjct 12708 AATGGTATTTCTTGGTCATCCCAATCCATCGGCGGCTCATTCTGCGGTGCTTGTGACTGT 12649 Query 25389 TGCTGCTGTGGTTTCTGTGACTGCCTGTCGGCTGCTTGT-TGTTTGCTGTCGCCAGTGCC 25447 | ||||| |||| | | ||| || |||| | || || |||| |||| | || Sbjct 12648 GGTTGCTGAGGTTGTCGCG-CTGGTTGCTGGCTTCCTGCCTGATTGC---CGCCGTTACC 12593 Query 25448 TCCAAGCATTTGCAT---CACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTC 25504 || ||||||||||| | | || || || | || | || || ||||| ||||| Sbjct 12592 ACCTAGCATTTGCATTGACCCGCCGATATTTACTACC---ACTTCCGTTGTGTATCGGTC 12536 Query 25505 TTGCCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCCTCGAAATAAACCTGATC 25564 ||| || | ||||||||||| || | ||| ||| || |||| || ||||| Sbjct 12535 TTGACCGCTTTGGTCTTGCCATTTACGCGTTTGCAGAGAGCCTTCGATGTATACCTGGCT 12476 Query 25565 ACCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCAACTACGGCAACACGATG 25624 |||||||||| ||| | ||| | |||||||| | || || | | | || ||||| Sbjct 12475 TCCTTTTTTCAGATATTCGCCTGCAACTTCAGCTAACTTGCCGAAAATTACCACTCGATG 12416 Query 25625 CCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGCCACTGCTCTGATGTAGC 25684 |||||| || | ||| ||| || | ||||| || |||||| || ||||| || Sbjct 12415 CCATTCGGTTTTCTCGCGCATTTCACCCGATTGTTTGTCACGCCACGATTCCGATGTGGC 12356 Query 25685 GACTGTCAGGTTAGCGAACGCCGTCCCTGATGGTGAATAACGAACCTCCGGGTCTTGCCC 25744 | ||| || || || | || ||||| ||| || |||| || |||||||| || Sbjct 12355 TAGTGTGAGATTTGCTACTGCTCCCCCTGCTGGCATGTATCGAATTTCAGGGTCTTGGCC 12296 Query 25745 GACCCGGCCTAAGATGATCACCTTATTTACGCCTCTACTAGCCATTTATGCCGCCTGTTT 25804 | | |||| || ||| ||||| ||||||||| ||||||||||||| || |||| ||| Sbjct 12295 TAAGTGACCTATGAGGATTACCTTGTTTACGCCTTTACTAGCCATTTACGCTGCCTCTTT 12236 Query 25805 TAGTTCTTTAACTCTGATG 25823 |||||||||| |||||| Sbjct 12235 AAGTTCTTTAATCCTGATG 12217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130993944744416