Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_013594.1 Length=37235 Score E Sequences producing significant alignments: (Bits) Value seq2557 176 1e-39 seq2595 114 3e-21 >seq2557 Length=24734 Score = 176 bits (194), Expect = 1e-39 Identities = 293/419 (70%), Gaps = 12/419 (3%) Strand=Plus/Minus Query 35136 ATTGGCTATGTAAGGGTATCAACAAATGACCAGAATACAGACCTGCAACGAAACGCTCTT 35195 ||||||||| | || |||||||||| ||| ||||||| || ||||| |||| || || Sbjct 21620 ATTGGCTATATCAGAGTATCAACAAGTGATCAGAATAGTGATTTGCAAAGAAATGCA-TT 21562 Query 35196 GTTTG---TGCAGGATGTGAACAAATATTTGAAGATAAATTAAGCGGAACAAGGACAGAC 35252 | | | || |||||| || |||||||| ||| | || || | || ||| | Sbjct 21561 GACCGATATTCAC--TGTGAAATGATTTTTGAAGACAAAATCAGTGGGAGAA---CAGCC 21507 Query 35253 A---GACCTGGATTAAAACGCGCGTTAAAGCGCCTTCAAAAAGGTGACACACTGGTTGTC 35309 | | || ||||||||||| |||||||||| ||| || || || |||||||||||| Sbjct 21506 AATCGCCCAGGATTAAAACGTGCGTTAAAGCACCTGAAATTTGGCGATACACTGGTTGTC 21447 Query 35310 TGGAAACTGGATCGCCTCGGGCGAAGCATGAAACATCTGATTTCCCTCGTCGGGGAACTA 35369 ||||| ||||||| || ||||| || | ||| ||||| | | || | ||||| Sbjct 21446 TGGAAGTTGGATCGTCTGGGGCGCAGTGTAAAAAATCTGGTGACACTAATTTCAGAACTG 21387 Query 35370 CGGGAGCGAGGGATTAATTTTCGCAGTCTTACCGACAGCATAGACACATCTTCTCCAATG 35429 | || | || ||| |||| | || || || ||||| || || || | | | ||| Sbjct 21386 CATGAACAGGGAATTCATTTCCAGAGCCTGACGGACAGTATTGATACCAGTACCGCTATG 21327 Query 35430 GGGCGTTTTTTCTTCCACGTTATGGGTGCCCTGGCTGAAATGGAACGAGAACTAATCATC 35489 ||||| ||||||||||| || ||| | || ||||| ||||||||||| || | ||| || Sbjct 21326 GGGCGGTTTTTCTTCCATGTGATGAGCGCACTGGCCGAAATGGAACGCGAGTTGATCGTC 21267 Query 35490 GAGCGAACGATGGCTGGACTTGCTGCCGCCAGAAATAAAGGCCGTATTGGTGGGCGACC 35548 || |||| | || || || ||||| ||| || | | || | || || || ||||| Sbjct 21266 GAAAGAACCAATGCAGGTCTGGCTGCTGCCCGACAACAGGGAAGGATCGGCGGACGACC 21208 >seq2595 Length=21780 Score = 114 bits (126), Expect = 3e-21 Identities = 226/334 (68%), Gaps = 3/334 (1%) Strand=Plus/Minus Query 34601 GCAGGTTGTTGATTTTTCGTGTTGTAGTCTCGTCGCCAGCCAGGAGCATAAGCATCACCA 34660 |||| | ||| ||| ||||| ||||| | || ||| | ||| ||||| | | ||| Sbjct 21611 GCAGATGGTTTATTCGCAGTGTTATAGTCCCTTCTCCAACTTGGAACATAATCCTTACCG 21552 Query 34661 TGATTAATATAAGTGAATTGAGCGTTAGTAATTCCGCCACCGCTGGACGTGCTCGGCGTG 34720 || || |||||| ||||||||||| | ||| | |||| | | || || | ||| Sbjct 21551 TGGTTTCCATAAGTAAATTGAGCGTTCGGAATACAGCCATCTATTGATGTAGGAGCCGTT 21492 Query 34721 GTAACGCGTATGGTCATTGCGCCGCGAGTGCCAATAACTTCCACCACAGCACCTGCAAGA 34780 ||||| || || |||||| | | | || || |||||||| |||||||| || | Sbjct 21491 GTAACACGGATCGTCATTACACTTTCAAGCCCCATGACTTCCACAACAGCACCCGCTAAG 21432 Query 34781 CAAATATTTCCGCAACCTGTATCTGTAATGACCTTATTATTTGCATAAGCCCATGAGCCT 34840 ||| || || || ||||| || || | || | ||||| | ||| || ||| Sbjct 21431 TGAATTGCACCACAGCCAGTATCAGTGATTCTTCTGTTGCTCGCATATGACCACGATCCT 21372 Query 34841 TTGCACATCCAGTAAGGATGGTTAAATGCCCCCTGACTCTCCAGCCACAAAATGAATTGT 34900 || |||||||||||||| |||||||| || | | ||| | ||||| ||| || | | Sbjct 21371 TTACACATCCAGTAAGGGTGGTTAAAAGCATCTTTACTTTTTAGCCATGCAATAAACTCT 21312 Query 34901 GCGGTTGTCCAGGCCTGACTATCGCCACCAATAT 34934 | |||||||| | || | | |||||||||| Sbjct 21311 TCAGTTGTCCAAG---TACCACCACCACCAATAT 21281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119026351776096