Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_013599.1 Length=36674 Score E Sequences producing significant alignments: (Bits) Value seq2565 134 3e-27 seq348 95.1 3e-15 >seq2565 Length=10326 Score = 134 bits (148), Expect = 3e-27 Identities = 209/292 (72%), Gaps = 9/292 (3%) Strand=Plus/Plus Query 7400 GCTCAGGTCCTCGAAGTCCTCCACGCTGGCCACACCGCCTCCAGCGAACGCCTCACCATC 7459 ||||||||| || || || ||||| || || || || || ||||| || |||||||| Sbjct 657 GCTCAGGTCATCAAACTCGTCCACTGACGCGACCCCACCGCCTGCGAATGCATCACCATC 716 Query 7460 ACGCAAGAACTGCACGCCACCCAGCGAAGCGTTAATCCGCTTGCCGTAGTTGTTGTCCTG 7519 || ||||||||||| || || || ||||| || | || || |||||| || | Sbjct 717 GCGGAAGAACTGCACCCCGCCGAGTGAAGCCGAGATACCTTTACC---GTTGTTATCGTA 773 Query 7520 CGCCCAGAGTTCT-ATGTTGGCGTTGACGTAGCATCCGGCATACGGCCTGCCGTCCTGCG 7578 | | | | | || ||| ||||||| || || || |||| || || ||||| ||||| | Sbjct 774 AG-CAAAAATACTGATGGTGGCGTTAACATAACAGCCGGAGTAGGGTCTGCCATCCTGAG 832 Query 7579 CGGTGAGCGGGGTCCGGTCACGGTCGACCACCAGTGGCCGTGCCTTGTTACGCGCAGAGA 7638 |||| || || || |||||||| || | |||| ||||| ||| ||||||| || || | Sbjct 833 CGGTCAGAGGTGTGCGGTCACGATCAATTACCAATGGCCTTGCTTTGTTACTGGCCGAAA 892 Query 7639 CGTATAGGTGCCCTGCAAACCCGTCAT-AGCTGGCTT-TCAGGTCGCCATCA 7688 || | ||| |||||| | || |||| | | ||||| ||| || |||||| Sbjct 893 TATACATGTGGCCTGCATAACCATCATAATCAGGCTTATCA--TCCCCATCA 942 >seq348 Length=55286 Score = 95.1 bits (104), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 18900 GGGCGTGAGGTACTGGAAGCGTGCTGGTGGCCGGATGGCGCAGCGTTGCGGCGTGGCCCC 18959 || || ||| | ||||| ||||||||||||||||||||||| ||| |||| || | Sbjct 28613 GGCCGGGAGCTGCTGGAGGCGTGCTGGTGGCCGGATGGCGCCGCGCTGCGCCGGCACAAG 28554 Query 18960 TTGCGCGATGCGGTGGTGGCCTTGGTGACGCCGGAGATTCGACGGCAGCAGCAGCG-CTT 19018 |||| || |||||| | || |||||||||||||| | | || ||||||| || || Sbjct 28553 CTGCGGGACGCGGTGATCGCGCTGGTGACGCCGGAGCTGCAGCGCCAGCAGCGCCGACTG 28494 Query 19019 GCTGGAAGCGCGTACAGACGTGGGCATTGTCAAAGCGTGCATGGGGTGGGCCCGAGCGAC 19078 ||| || || || || || | ||| | | | | | |||||| || |||| | | || | Sbjct 28493 GCT-GAGGCCCGGACGGATCTCGGCCTGGCCGAGGTGTGCATCGGTTGGGGCGGCTCGGC 28435 Query 19079 GACAAGCGCA-CAGCAGGCG 19097 ||| ||| | |||| |||| Sbjct 28434 GAC-GGCGGAGCAGCGGGCG 28416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117231212830848