Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 136 6e-27 seq1889 123 4e-23 >seq4 Length=195412 Score = 136 bits (150), Expect = 6e-27 Identities = 310/464 (67%), Gaps = 2/464 (0%) Strand=Plus/Minus Query 159906 GGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACT 159965 ||| ||| ||| |||||| |||||||| | ||| || || || || || || || | | Sbjct 71395 GGTACTTGTACATGAGGCAGGCAAAGTCACGGTGAAGGCCTTCATCGCGGGAAATCAGTT 71336 Query 159966 CGTTGGACATGA-TGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA 160024 ||||| ||| |||| || ||||||| || ||| ||||||||||| ||||| || Sbjct 71335 CGTTGCTG-TGAGTGAGTCCAGGCATGAGGCCTCGCTTCTTGAGCCAAAAGATGGCAGCG 71277 Query 160025 AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAA 160084 || | || || ||||| || || ||||| || ||||| | | | ||||| Sbjct 71276 AACGACCCAGAGAAGAAGATTCCTTCAACGGCGGCGAACGCGATAACGCGAGTTCCAAAT 71217 Query 160085 GAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGC 160144 || ||||| |||| | |||| | ||||| || |||||||| |||||| || Sbjct 71216 GAAGCGTTCTTGTCGCCGATCCAGCGCAGAGCCCAGTCCGCCTTCTTCTTGATGCAAGGG 71157 Query 160145 ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCA 160204 | | || |||||| || | || ||||||| ||| || || || Sbjct 71156 AACTCGTGGATGGCGTTGAAAAGAACGTTGCGCTCCTTTGGATCGACGACGTAAGCTTCA 71097 Query 160205 ATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAA 160264 |||| ||| |||||||| || | ||| | ||||| ||||||||| ||| ||||||| Sbjct 71096 ATCATCTTGGAGTACATCTCCGAGTGGATGCCTTCGACGGCCATCTGGAAGCTGTAGAAG 71037 Query 160265 TATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACC 160324 | || || | || |||||||| ||||| | | | || || |||| || Sbjct 71036 GACAAGGCTTCTGGCATCTTGACCTCCTGGGTGAAACGCTCGACGAGGTTTTCATTGACG 70977 Query 160325 AACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAA 160368 | || |||| ||| |||||||||||||| ||| | |||||||| Sbjct 70976 ATTCCATCGGAGGCGGCAAAGAAAGCCAAAACGCGGGAGATGAA 70933 >seq1889 Length=309471 Score = 123 bits (136), Expect = 4e-23 Identities = 257/372 (69%), Gaps = 8/372 (2%) Strand=Plus/Plus Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCA 204020 ||||||||| |||||||| ||||| ||||| ||| | |||||| || || || |||| Sbjct 13778 GGCCATGTGGATGTTCAGGGACTGCGACTGGTCTATGTA-GGCGCCGCGGTCGGCCGCCA 13836 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG-TGT 204079 | | || ||| |||||| || |||||||| ||||||||| ||| |||| || | | Sbjct 13837 TCTCCATGATGTCCTTCTGAGAGATCTCCCAGACCGTCTTGTACAAGTCT-TGCAGATCC 13895 Query 204080 TGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 | || | || | | | |||| || || || | || || | |||| | || | Sbjct 13896 TTGGGAATGTCGGCG-ATGCCCTGGATGGATCCACCCTTCGCGATGA-TCTCGTTCTTGA 13953 Query 204139 CTCC-TCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCT 204197 | || |||||| | || | | || ||| | || ||| ||||||| ||||| Sbjct 13954 GTTTGTCGTCCCACAGGTTCAGCTCAACCAAGTCCTTGAGCAAGTGAGGGTTGACGATCT 14013 Query 204198 GAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCT 204257 | ||||| ||||| || || | ||| || | | |||| |||| | || |||| || || Sbjct 14014 GGAAGTCGCCGGAAAGGACACGACGGCTGTAGATGTTGGAGGTGTACGGCTCGATCGACT 14073 Query 204258 CGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGT 204317 ||||||| |||| || ||||| ||| ||||||||||| ||||| | || ||| || Sbjct 14074 CGTTGTTTCCGAGGATTTGAGCAGTGGACGCCGTGGGCATCGGAGCAACCAGAAGGCTGT 14133 Query 204318 TGCGCACACCGT 204329 |||| || |||| Sbjct 14134 TGCGGACTCCGT 14145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795126733443840