Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2162 156 1e-32 seq2252 152 1e-31 seq1859 96.9 8e-15 seq1739 84.2 5e-11 >seq2162 Length=74254 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| || |||||||||||||| |||||||| |||| |||||||||| |||||| Sbjct 49320 TCGAAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTCAAAGT 49261 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| |||||| || || ||||| || ||||||||||| ||| |||||| Sbjct 49260 GCGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGGAATTCC 49201 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| |||||| ||| | |||||| | || || || | Sbjct 49200 TTCCTTGTCTTGGATCTTAGCTTTCACGTTTTCAATGGTGTCAGAACCCTCGACCTCAAG 49141 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || || ||||| || ||||| || || Sbjct 49140 AGTGATCGTTTTGCCTGTCAGAGTCTTGACAAAGATCTG 49102 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || ||||| ||||| |||| ||||||||| |||||| Sbjct 48635 CGAAGGCGAAGAACTAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAAGTG 48576 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||||||||| ||||||||||| | ||||||||| ||| || || Sbjct 48575 CGGCCATCTTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCAGGAGGGATGCCC 48516 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | || ||||| || || || | Sbjct 48515 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGAGTCTGAACCCTCAACCTCAAGG 48456 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || ||||| || ||||| Sbjct 48455 GTGATCGTCTTGCCCGTAAGCGTCTTCACGAAGATTTG 48418 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| |||||||| |||| ||| ||||| ||| || | ||||| Sbjct 48854 AGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATCC 48795 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||||||||||||||| ||||| || || || || |||||||||| || Sbjct 48794 TCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTCT 48735 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| |||| || ||| | | ||| || || | ||||| ||| Sbjct 48734 TGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGGTC 48675 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | |||||||| || || || Sbjct 48674 TTTCCTGTCAACGTTTTCACGAAGATCTG 48646 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 199436 GACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCG 199495 |||||||| |||| |||||||||| |||||| | |||||||||| ||||||||||||| Sbjct 49651 GACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCG 49592 Query 199496 AAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACG 199555 ||||| ||||| || || || || ||||||||| ||||| ||||| |||||| Sbjct 49591 AAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCACA 49532 Query 199556 GATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTC 199615 |||| | || | | ||| || || | ||||| ||||| || || | |||||| Sbjct 49531 TTCTCGATCGAATCGGATCCTTCAACCTCGAGAGTGATGGTCTTTCCGGTCAACGTTTTC 49472 Query 199616 ACAAAAATTTG 199626 || || || || Sbjct 49471 ACGAAGATCTG 49461 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| || || ||||||||||||||||| | |||||| || |||||| ||||| Sbjct 49225 CTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTACAACATCCAG 49284 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || ||||| ||||| ||||||||| | |||||||| Sbjct 49285 AAGGAGTCCACTCTCCACCTTGTTCTCCGACTTCGA 49320 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||||||||||||||| |||| ||||| | || ||| ||| || ||| ||||| Sbjct 48769 CTTATCTTCGCCGGAAAGCAACTGGAGGATGGCCGCACCTTGAGCGACTATAACATCCAG 48828 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 || ||||| ||||| ||||||||| Sbjct 48829 AAGGAGTCCACTCTCCACCTTGTT 48852 >seq2252 Length=1130325 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || ||||| ||||| |||| ||||||||| | |||||| | |||||| Sbjct 563174 AGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCT 563233 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||||||||| | ||||||||||| || |||||||||| || Sbjct 563234 TCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCT 563293 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| ||||| || || | | || || |||| ||||| ||| Sbjct 563294 TGGATCTTGGCCTTCACGTTTTCGATAGTATCAGATCCCTCGACCTCCAGGGTGATGGTC 563353 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| ||||| || ||||| Sbjct 563354 TTTCCGGTCAAAGTCTTCACGAAGATTTG 563382 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || ||||| || || ||||| |||| ||||||||| | |||||| Sbjct 563518 CGAAGGCGGAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTG 563577 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||||||||||||||| || ||||||||||| || |||||| Sbjct 563578 CGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCC 563637 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| |||||| | | ||| || || | Sbjct 563638 TCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGG 563697 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| ||||| || ||||| Sbjct 563698 GTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTG 563735 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || ||||| || || || || |||| ||||||||| | || ||| Sbjct 562709 CGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTC 562768 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || |||||||||||||||||||| | |||||||| || || ||||| Sbjct 562769 CTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCC 562828 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || ||||||||| ||| ||| ||| | |||||| | || || || | Sbjct 562829 TCTTTATCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGA 562888 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| ||||| |||||||| Sbjct 562889 GTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTG 562926 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || || ||||| |||| ||||||||| | |||||| | ||||| Sbjct 562215 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCC 562274 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| || ||||||||||| || || || || ||| Sbjct 562275 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCC 562334 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| ||| || | |||||| | || || |||| ||||| ||| Sbjct 562335 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTC 562394 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||||||| || || || Sbjct 562395 TTTCCGGTCAAAGTTTTCACGAAGATCTG 562423 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || || ||||| |||| |||||||||| | || | |||||| Sbjct 562946 AGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATCT 563005 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||||||||| | ||||||||||| || |||||| || || Sbjct 563006 TCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 563065 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | ||| || || | ||||| ||| Sbjct 563066 TGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTC 563125 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| ||||| Sbjct 563126 TTTCCCGTGAGGGTCTTGACAAAGATTTG 563154 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || ||||| ||||| |||| ||||||||| | || | ||||| Sbjct 563755 AGGACTAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 563814 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| || |||||||| || ||| ||| || || ||| Sbjct 563815 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCC 563874 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||||| ||||| | | ||| || || | ||||| ||| Sbjct 563875 TGGATCTTAGCCTTGACGTTTTCGATAGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTC 563934 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || ||||| Sbjct 563935 TTTCCCGTGAGGGTCTTGACGAAGATTTG 563963 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||||||||||||||||||||| | |||||| |||| |||||| ||||||| Sbjct 563256 ATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTTTGTCCGACTACAACATCCAGAAG 563197 Query 200998 GAGTCTACTCTTCACCTTGT 201017 || || || ||||| || || Sbjct 563196 GAATCGACCCTTCATCTCGT 563177 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||||||||||||| | || ||||||||||| || |||| |||||| |||||||| Sbjct 562800 ATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACCCTGTCCGACTACAACATCCAGAAA 562741 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| || || || ||| | | ||||| Sbjct 562740 GAATCTACGCTCCATCTGGTTCTCCGCCTTCG 562709 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||| ||||||||||| |||||||| || |||||||||| ||||| ||||| Sbjct 562558 CTTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTT 562617 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| |||| |||||| | ||| || || | ||||| ||||| || || Sbjct 562618 GGCCTTCACATTCTCGATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGT 562677 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| Sbjct 562678 GAGGGTCTTGACGAAGATTTG 562698 >seq1859 Length=77309 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || ||||||||||| ||||||||||| || |||||||| || |||||||| Sbjct 72681 CTTACCTGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCTTGAATCTT 72622 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||||| |||| ||||| | | ||| || || | ||||||||| |||||||| Sbjct 72621 GGCCTTCACGTTCTCGATCGTGTCGGAGGCTTCGACCTCGAGCGTGATCGTTTTACCCGT 72562 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || || || Sbjct 72561 GAGGGTTTTGACGAAGATCTG 72541 >seq1739 Length=92152 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| || ||||||||||| || |||||| || ||||| ||||| Sbjct 77047 CTTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTT 76988 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| |||| |||||| | | || || |||| ||||||||||| || || Sbjct 76987 GGCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGT 76928 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || Sbjct 76927 CAGCGTCTTGACAAAGATCTG 76907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178878339471888