Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2252 129 7e-25 seq2162 102 9e-17 seq1739 102 9e-17 >seq2252 Length=1130325 Score = 129 bits (142), Expect = 7e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | ||| ||||| ||||| ||||||||||| | |||||| | || ||| Sbjct 563530 ACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCG 563589 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| |||| |||||||||||| | || | | ||||||||| | Sbjct 563590 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGG 563649 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | ||||| | ||| || || | |||||||| || Sbjct 563650 ATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTT 563709 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || ||||||||||| Sbjct 563710 CCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 127 bits (140), Expect = 2e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| | |||||| | || ||||||||||| |||||||| Sbjct 562236 TCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 562295 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||||||| | || | || |||||| ||| |||||| ||||| || Sbjct 562296 ATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTC 562355 Query 46523 GCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| ||| || || |||| |||||||| || || |||| ||||| Sbjct 562356 TCAATGGTGTC---CGAACCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTTTTC 562412 Query 46580 ACAAAGATTTGCATT 46594 || ||||| |||||| Sbjct 562413 ACGAAGATCTGCATT 562427 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||| || ||||| | || ||||||||||| |||||||| Sbjct 563776 TCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAG 563835 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||| |||| || | || |||||||||| |||||| ||||| | Sbjct 563836 ATCAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTT 563895 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||| || || | |||||||| || ||||| || || || || Sbjct 563896 TCGATAGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACG 563955 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 563956 AAGATTTGCAT 563966 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || ||||| | || || | |||||| |||||||| Sbjct 562967 TCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAG 563026 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||||||||| | || | | ||||||||| |||||| ||||| || Sbjct 563027 ATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTC 563086 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||| || || | ||||| || || ||||| || || || ||| Sbjct 563087 TCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCCGTGAGGGTCTTGACA 563146 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 563147 AAGATTTGCAT 563157 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| | |||||| | || || | |||||| |||||||| Sbjct 563195 TCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAG 563254 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||||||||| | || | | || || || |||||| ||| | | Sbjct 563255 ATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCTTGGATCTTGGCCTTCACGTTT 563314 Query 46523 GCCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || | || || || |||| |||||||| || || |||| || || || Sbjct 563315 TCGATAGTATCAGATC-CCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCAC 563373 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 563374 GAAGATTTGCAT 563385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | ||| || || ||||| ||||||||||| || || | | || ||| Sbjct 562721 ACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATCCTCG 562780 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| |||||||||||||| || | || | | ||| || || Sbjct 562781 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTATCTTGA 562840 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTT 46561 ||||| ||||| | | | ||||| ||| || || || | |||||||| Sbjct 562841 ATCTTTGCCTTGACGTTTTCAATGGTGTC---CGAACCCTCAACTTCAAGAGTGATGGTC 562897 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || |||| || || || || ||||||||| Sbjct 562898 TTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 562930 >seq2162 Length=74254 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||| | |||||| | || ||||||||||| || ||||| Sbjct 48605 TCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAG 48546 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||||||||| | || | || |||||||||| ||||||| ||| | || Sbjct 48545 ATGAGTCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 48486 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| || || || | ||||| || |||||||| ||||| || || Sbjct 48485 TCAATGGAGTCTGAACCCTCAACCTCAAGGGTGATCGTCTTGCCCGTAAGCGTCTTCACG 48426 Query 46583 AAGATTTGCATTTT 46596 ||||||||||| || Sbjct 48425 AAGATTTGCATCTT 48412 >seq1739 Length=92152 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 46450 CTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 ||| |||||||| |||| |||||||||||| | || | | |||||||||| |||||| Sbjct 77047 CTTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTT 76988 Query 46510 CTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 ||||| || | | |||||||| | || || |||| ||||| || ||||| || Sbjct 76987 GGCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGT 76928 Query 46570 CAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || |||||||| ||||| Sbjct 76927 CAGCGTCTTGACAAAGATCTGCAT 76904 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 46450 CTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 ||| ||||| || |||| ||||||||||| | || | || |||||||| ||||| Sbjct 75671 CTTACCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGAATCTT 75612 Query 46510 CTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 ||||| || | | |||||||| | ||| || |||| |||||||| ||||| || Sbjct 75611 GGCCTTGACATTCTCGATTGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGT 75552 Query 46570 CAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || ||||| ||||| Sbjct 75551 CAGCGTCTTGACGAAGATCTGCAT 75528 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 46450 CTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 ||| || ||||| |||| ||||| ||||| | || | | ||||||||| |||||| Sbjct 75396 CTTACCAGCGAAAATCAGACGCTGTTGGTCTGGAGGGATCCCTTCCTTGTCCTGGATCTT 75337 Query 46510 CTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 ||||| | | | |||||||| | || || |||| |||||||| || ||||| Sbjct 75336 GGCCTTGACGTTTTCGATGGTGTCGCTGGCCTCGACCTCCAGGGTGATGGTCTTCCCCGT 75277 Query 46570 CAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || ||||||||||| ||| Sbjct 75276 AAGGGTTTTGACGAAGATTTGCATGTTG 75249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565218164465280