Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 206 3e-48 seq2252 152 5e-32 seq2162 120 3e-22 seq1739 100 3e-16 seq1581 82.4 8e-11 >seq4 Length=195412 Score = 206 bits (228), Expect = 3e-48 Identities = 338/484 (70%), Gaps = 6/484 (1%) Strand=Plus/Minus Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 |||| |||| | ||| |||||||| | || | ||| || || | |||||| |||||||| Sbjct 71391 CTTGTACATGAGGCAGGCAAAGTCACGGTGAAGGCCTTCATCGCGGGAAATCAGTTCGTT 71332 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 |||| ||| | || ||||||||||| || || ||||||||||| ||||| ||||| Sbjct 71331 GCTGTGAGTGAGTCCAGGCATGAGGCCTCGCTTCTTGAGCCAAAAGATGGCAGCGAACGA 71272 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 || || ||||||| || || ||||| ||||| || | | ||| || || | || Sbjct 71271 CCCAGAGAAGAAGATTCCTTCAACGGCGGCGAACGCGATAACGCGAGTTCCAAATGAAGC 71212 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGT 133121 | ||| | ||||||||||||| ||||| || ||||| | |||| ||| || | | Sbjct 71211 GTTCTTGTCGCCGATCCAGCGCAGAGCCCAGTCCGCCTTCTTCTTGATGCAAGGGAACTC 71152 Query 133122 TTCGATGGCGTTCAACA-AACGGAGTTTCTCTTCCGAGGAACG--CACGTAGGTGTCGAT 133178 | ||||||||| || | ||| ||| | || | ||| || ||||| | || || Sbjct 71151 GTGGATGGCGTTGAAAAGAAC---GTTGCGCTCCTTTGGATCGACGACGTAAGCTTCAAT 71095 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 | | || ||||| |||||||| | | || | ||| || || |||| ||| ||| | Sbjct 71094 CATCTTGGAGTACATCTCCGAGTGGATGCCTTCGACGGCCATCTGGAAGCTGTAGAAGGA 71035 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 | || || || || || || || | |||||||||||| || ||||| |||||||| Sbjct 71034 CAAGGCTTCTGGCATCTTGACCTCCTGGGTGAAACGCTCGACGAGGTTTTCATTGACGAT 70975 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 || ||| |||||| || || |||| ||| | |||||| |||||| | |||| Sbjct 70974 TCCATCGGAGGCGGCAAAGAAAGCCAAAACGCGGGAGATGAAGAACTGCTCGTCGGCGTT 70915 Query 133359 CAAG 133362 |||| Sbjct 70914 CAAG 70911 >seq2252 Length=1130325 Score = 152 bits (168), Expect = 5e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || |||||||| || ||||||||| |||| ||||| ||| | Sbjct 563966 ATGCAAATCTTCGTCAAGACCCTCACGGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 563907 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| ||||| ||||| ||||| |||| || Sbjct 563906 GACACTATCGAAAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCA 563848 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || ||||| || || | |||||||||| ||||||||| Sbjct 563847 GCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCAGCGACTACAA 563788 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||| |||| || ||| | || || || Sbjct 563787 CATCCAGAAGGAATCGACCCTTCATCTAGTCCTCCG 563752 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || |||||||| || || |||||| |||| ||||| ||| | Sbjct 563157 ATGCAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACCCTCGAGGTCGAAGCCTCT 563098 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||||||| | ||||| Sbjct 563097 GACACCATCGAGAACG-TCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCA 563039 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || ||| |||| || | |||||||||| |||||||| Sbjct 563038 GCAGCGCTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCAGTGACTACAA 562979 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || || | || || ||| Sbjct 562978 CATCCAGAAGGAATCCACCCTTCACCTCGTTCTTCGT 562942 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || ||||||||| |||| ||||| ||| | Sbjct 563738 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 563679 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||||||| | ||||| Sbjct 563678 GACACCATCGAGAACG-TCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCA 563620 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || ||||| || || | ||||| | ||||||||| Sbjct 563619 GCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAA 563560 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||| | ||||| ||| |||| || || Sbjct 563559 CATCCAGAAGGAATCTACGCTCCATCTGGTTCTCCG 563524 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || ||||||||| | || ||||||| | Sbjct 563385 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGGATCT 563326 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| | || | || |||| || ||||| ||||||||| | ||||| Sbjct 563325 GATACTATCGAAAACG-TGAAGGCCAAGATCCAAGATAAAGAAGGAATTCCCCCAGACCA 563267 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || ||| |||| || | ||||| | ||||||||| Sbjct 563266 GCAGCGCTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTTTGTCCGACTACAA 563207 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| |||| || ||| | || || ||| Sbjct 563206 CATCCAGAAGGAATCGACCCTTCATCTCGTCCTTCGT 563170 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| | || || || ||||||||| | || ||||||| | Sbjct 562427 AATGCAGATCTTCGTGAAAACTTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGGTTC 562368 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | ||| |||| || || ||||| || ||| | |||| Sbjct 562367 GGACACCATTGAGAACG-TCAAGGCAAAGATCCAGGATAAGGAGGGCATCCCCCCAGACC 562309 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| || || ||||| || || | ||||| | |||||||| Sbjct 562308 AGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACA 562249 Query 38422 ACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||| |||||| | || || || Sbjct 562248 ACATCCAGAAGGAATCCACCCTTCA 562224 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || | || || || |||||||| | || || |||| | Sbjct 562930 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTTGAGGGTTC 562871 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| | || | ||| || | || ||||||||||| ||| | || | Sbjct 562870 GGACACCATTGAAAACG-TCAAGGCAAAGATTCAAGATAAAGAGGGAATCCCCCCAGATC 562812 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| || || ||||| || || | | ||||| |||||||| Sbjct 562811 AGCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACCCTGTCCGACTACA 562752 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| || ||| | ||||| ||| |||| || || Sbjct 562751 ACATCCAGAAAGAATCTACGCTCCATCTGGTTCTCCG 562715 >seq2162 Length=74254 Score = 120 bits (132), Expect = 3e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| ||||| || ||||| |||||||| || |||||| | || || |||| Sbjct 48411 AAAGATGCAAATCTTCGTGAAGACGCTTACGGGCAAGACGATCACCCTTGAGGTTGAGGG 48470 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | ||| | | | |||| | || | || |||| ||||| ||||| || || | | Sbjct 48471 TTCAGACTCCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCTG 48529 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| | ||||| | ||| || || ||||| || || | ||||| | | ||||| Sbjct 48530 ACCAGCAGAGACTCATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGCACTTTGAGCGACT 48589 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||||| |||||| ||||||| || Sbjct 48590 ACAACATCCAGAAGGAATCGACGCTTCA 48617 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || |||||||||||||| ||||| | || ||||||| | | Sbjct 48870 AATGCAGATTTTCGTGAAGACCCTCACGGGCAAAACGATCACATTGGAAGTCGAGGGCTC 48929 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | ||||| | |||| || || | |||||||| ||||| ||| | || | Sbjct 48930 TGATTCGATCGAAAACG-TCAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATC 48988 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || || || || || || || | ||||| | | ||||| | Sbjct 48989 AGCAGCGATTGATCTTTGCTGGGAAGCAACTTGAGGATGGCCGCACTTTGAGTGACTATA 49048 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||| ||||||| || ||||| || ||| | |||| || Sbjct 49049 ACATCCAAAAGGAATCGACGCTTCACTTGGTCCTCCGTCTTCGAGGAGG 49097 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || |||||||| ||||| | || ||||||| | Sbjct 49099 ATGCAGATCTTTGTCAAGACTCTGACAGGCAAAACGATCACTCTTGAGGTCGAGGGTTCT 49158 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | |||| || |||| ||||| || |||||||| ||||||| Sbjct 49159 GACACCATTGAAAACG-TGAAAGCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGACCA 49217 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||| || | || ||||| ||| |||| || | ||||| | | |||||||| Sbjct 49218 GCAGCGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTACAA 49277 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 49278 CATCCAGAAGGA 49289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| |||||| | || || || |||||||| |||| || || | | Sbjct 49457 AATGCAGATCTTCGTGAAAACGTTGACCGGAAAGACCATCACTCTCGAGGTTGAAGGATC 49516 Query 38303 CGAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 ||| | || | || | | || | || |||| ||||| || ||||||||| | || Sbjct 49517 CGATTCGATCGAG--AATG-TGAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGA 49573 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || || || | ||| || || ||| |||| || | ||||| | | ||||| Sbjct 49574 TCAACAACGTCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTA 49633 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| ||||| Sbjct 49634 CAACATCCAGAAGGA 49648 >seq1739 Length=92152 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| ||||| || ||||| || ||||||||| | || ||||||||| Sbjct 75250 AACATGCAAATCTTCGTCAAAACCCTTACGGGGAAGACCATCACCCTGGAGGTCGAGGCC 75309 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | ||||| | || | || |||| ||||| || || || || | || Sbjct 75310 AGCGACACCATCGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCAGA 75368 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAA 38386 ||||||||| || |||| ||| || || Sbjct 75369 CCAACAGCGTCTGATTTTCGCTGGTAA 75395 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| ||||||||| | || ||||| |||| Sbjct 76354 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTCGAAGCCAGT 76413 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || || | |||||||| || ||||| | ||||| Sbjct 76414 GACACAATTGAAAACG-TCAAGGCGAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCA 76472 Query 38363 ACAGCGGCTCAT 38374 |||||| || || Sbjct 76473 ACAGCGCCTGAT 76484 >seq1581 Length=32506 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 69067 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGAAAACGGCGTGCCCTACTGGGCG 69126 ||| |||||||||| || || || || ||||| |||||||||||| |||| |||| Sbjct 15445 CTCGACCACGCCGTCCTTCTCGTGGGTTACGGTAACGAAAACGGCGTTCCCTTCTGGATT 15386 Query 69127 TTCAAAAACACGTGGGGTGACGACTGGGGCGAAAACGGCTATTTCCGC 69174 |||| |||| ||||| | ||||||| || |||||||| |||||| Sbjct 15385 GTCAAGAACAGCTGGGGCAAGAACTGGGGAGAGAACGGCTACTTCCGC 15338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500154893813760