Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2163 122 3e-22 seq2162 104 9e-17 seq2252 91.5 6e-13 >seq2163 Length=12968 Score = 122 bits (134), Expect = 3e-22 Identities = 184/259 (71%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCT-CCTGAAGA 451251 |||||||| | | ||||| ||| ||||| ||||| || || || ||| |||||| | Sbjct 12606 GGAAAGCCGAAGTTCCAAGTCGGTTACAAAGGAGAAACGAAGACCTT-GCTACCTGAACA 12664 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 | | || || ||||| || | || ||||| ||||| || ||| || | || || || Sbjct 12665 AGTCTCCTCGATGGTCCTCTCGAAGATGAAGGAAACGGCCGAAGCTTACCTGGGATCGCC 12724 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 || | ||||| || || || ||||| ||||| ||||| ||||| || || || ||||| Sbjct 12725 CGTCAAGGATGCCGTCATCACAGTTCCAGCTTACTTCAACGATGCTCAGCGCCAGGCAAC 12784 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 || || || || || |||||| | || ||||| | || || || || || ||||| Sbjct 12785 AAAGGACGCCGGCGCCATCGCTGGTCTGAACGTTCTCAGGATCATCAACGAGCCCACAGC 12844 Query 451432 AGCTGCTCTAGCATATGGA 451450 |||||| | || |||||| Sbjct 12845 AGCTGCAATGGCTTATGGA 12863 >seq2162 Length=74254 Score = 104 bits (114), Expect = 9e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| |||| || || || || ||||| || |||||| ||| Sbjct 48642 AATGCAGATCTTCGTGAAAACGTTGACAGGAAAGACCATCACTCTCGAGGTTGAAGGATC 48701 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| ||| || | ||| || |||||||| || ||||||||||| || ||||| Sbjct 48702 TGACTCCATCGAGAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATTCCCCCAGATCA 48761 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||| | || ||| | || || ||||| || ||||| | || ||| || ||||| Sbjct 48762 ACAACGTCTTATCTTCGCCGGAAAGCAACTGGAGGATGGCCGCACCTTGAGCGACTATAA 48821 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 48822 CATCCAGAAGGAGTCCACTCTCCAC 48846 Score = 89.7 bits (98), Expect = 2e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| |||| || || || || ||||| || |||||| ||| Sbjct 49457 AATGCAGATCTTCGTGAAAACGTTGACCGGAAAGACCATCACTCTCGAGGTTGAAGGATC 49516 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| || || | | || || || || || |||||||||||||| || ||||| Sbjct 49517 CGATTCGATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 49576 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||| | || ||| | || || || | |||||||| | |||||| || || || Sbjct 49577 ACAACGTCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTACAA 49636 Query 391229 TATTGATAAGGA 391240 || | ||||| Sbjct 49637 CATCCAGAAGGA 49648 Score = 87.8 bits (96), Expect = 7e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||| || ||||| || |||||||| || || ||| Sbjct 49099 ATGCAGATCTTTGTCAAGACTCTGACAGGCAAAACGATCACTCTTGAGGTCGAGGGTTCT 49158 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | ||| || || ||||| ||||||||||||||||| || || Sbjct 49159 GACACCATTGAAAACGTGAAAGCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGACCAG 49218 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | || || || | |||||||| | |||||| || || || Sbjct 49219 CAGCGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTACAAC 49278 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 || | ||||| | || || ||| | || | |||| ||||| ||| || Sbjct 49279 ATCCAGAAGGAGTCCACTCTCCACCTTGTTCTCCGACTTCGAGGAGGAATGCA 49331 >seq2252 Length=1130325 Score = 91.5 bits (100), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || |||| || || || || |||||||| ||||| || Sbjct 562930 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTTGAGGGTTC 562871 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||||| | || ||| ||||||||||| || ||||| || || ||||| Sbjct 562870 GGACACCATTGAAAACGTCAAGGCAAAGATTCAAGATAAAGAGGGAATCCCCCCAGATCA 562811 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || || || ||| | || || || || || |||||||| || || | || || || Sbjct 562810 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACCCTGTCCGACTACAA 562751 Query 391229 TAT 391231 || Sbjct 562750 CAT 562748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975645901013312