Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2060 311 1e-79 seq1727 219 5e-52 seq7 113 6e-20 seq1899 105 8e-18 seq2488 100 4e-16 >seq2060 Length=72729 Score = 311 bits (344), Expect = 1e-79 Identities = 622/922 (67%), Gaps = 0/922 (0%) Strand=Plus/Minus Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 |||||| || || || || || | | |||| | |||||| | ||| || || | Sbjct 56079 TCTTAGTGGGGATGGTGGTGTTGCGCTTGATAAGAGCGGTCATGACACCTCCGGCGGTCT 56020 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007 ||| || || |||||||| | ||||| | ||| | |||||| || || | ||| | Sbjct 56019 CGATACCGAGGGACAGAGGGGCGACGTCGAGGAGGAGCAGGTCCTGGACGGCCTCGGACT 55960 Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067 ||||| | | ||||||||| ||||| | || ||||| ||||| ||||||||||||| Sbjct 55959 TGTCACCGGAGAGGATGGCGGCCTGGACGGCGGCTCCGTAGGCGACGGCCTCATCGGGGT 55900 Query 7068 TAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCG 7127 | || | || || ||||| || ||| || | ||||| | | | || | || | Sbjct 55899 TGATGCTCTTGTTGAGTTCCTTTCCGGAGAAGAAGTCCGAGAGGAGCTTCTGGACCTTGG 55840 Query 7128 GGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTG 7187 |||| || || ||||| ||||| | ||||| || | | | || || || ||||| | Sbjct 55839 GGATACGGGTGGATCCTCCGACGAGGACGATATCGTGGATCTGGGACTTGTCCATCTTGG 55780 Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT 7247 ||| || | | || ||||| || |||||| || ||||| | ||| || |||| Sbjct 55779 CGTCACGGATGGCCTTCTCGACGGGGTCCATAGTGTTGCGGAAGAGGTCAGCGCAAAGTT 55720 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 |||| ||||| || ||||| ||| || ||||| || | |||||| | | || || | Sbjct 55719 CCTCGAAACGGGCGCGGGTGATGTTGGTGTAGAAGTCGATTCCGTCGAAGAGGGAGTCGA 55660 Query 7308 TTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTC 7367 |||| ||| | | || | || || | || ||||| ||||| || || || || | Sbjct 55659 TTTCGATGCTGGCCTGGGACGAGCTGGACAGGGTGCGCTTGGCGCGTTCGCAAGCGGTGC 55600 Query 7368 GTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT 7427 | | ||| || |||||||| ||||| | || | || ||||| || || || || |||| Sbjct 55599 GGAGACGGCGGAGGGCACGAGGGTTGGCCGAGAGGTCCTTCTTGTGCTTGCGCTTGAACT 55540 Query 7428 CTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCC 7487 | | |||||| || | | ||||| || || || || | || || || | Sbjct 55539 CAGCGACGAAGTGGTTAACCATGCGGTTGTCGAAGTCCTCTCCTCCGAGATGGGTGTCTC 55480 Query 7488 CCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACG 7547 | ||||||| ||||| || |||||||| | || ||| | | | || ||||| || | Sbjct 55479 CGGCGGTCGACTTGACCTCGAAGATACCGTCCTCGATGGTCAGGATGGACACATCGAAGG 55420 Query 7548 TACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGAC 7607 ||||||| || || || || ||||| ||||| ||| | | ||||| || |||| Sbjct 55419 TACCACCTCCAAGATCGAAGATGAGGACGTTGCGCTCGCCCTGGGCCTTCTTGTCAAGAC 55360 Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAA 7667 |||| ||||| || || || || || || || || ||||| || ||| || || || | Sbjct 55359 CGTAAGCGATGGCGGCAGCGGTAGGCTCGTTGATGATACGGAGCACGTTAAGACCGGCGA 55300 Query 7668 TAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTA 7727 | | | | || || || || || || || || || ||||| |||||||| ||||| || | Sbjct 55299 TGGCTCCGGCGTCCTTGGTGGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACGGTGA 55240 Query 7728 CGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAA 7787 ||| || ||| |||| | ||||| | | || ||| | || ||||| ||| | | Sbjct 55239 TGACGGCATCCTTGACGGTGGATCCGAGGAAAGCCTCGGCGGTCTCCTTCATCTTGATGA 55180 Query 7788 GAACCATCGATGAAATCTCTTC 7809 ||||||| || || |||||||| Sbjct 55179 GAACCATGGAAGAGATCTCTTC 55158 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| ||||||||||||| |||||||| || || || ||||||||||| Sbjct 54957 AACACGGTGTTGATGGGGTTCATGGCAACCTGGTTCTTGGCGGCATCTCCGATAAGACGC 54898 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || || || |||||||| || || || || || || || || || || ||| Sbjct 54897 TC---GGTGTCGGTGAAGGCGACGTAGGAGGGAGTGGTACGGTTTCCCTGATCATTGGCA 54841 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 ||||| || || | ||| | || |||||||| || || || ||||| | |||| Sbjct 54840 ATAATCTCAACCTTGCCGTGCATGAACACTCCGACGCAGGAGTAAGTCGTTCCGAGATCA 54781 Query 8138 ATACCGATTGC 8148 ||||| || || Sbjct 54780 ATACCAATGGC 54770 >seq1727 Length=126652 Score = 219 bits (242), Expect = 5e-52 Identities = 763/1193 (64%), Gaps = 62/1193 (5%) Strand=Plus/Plus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | |||||| || || | ||| || ||||| || | |||||||| || | Sbjct 77047 GTCATGACACCACCAGCGGTCTCAATTCCGAGCGACAGTGGGGCGACGTCCAAAAGAAGG 77106 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || || || || | ||| || || || | | ||| ||||||||||| | || ||| Sbjct 77107 AGATCCTGGACGGCCTCGCTCTTGTCTCCGGAGAGGATAGCGGCTTGGACGGCAGCTCCG 77166 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || ||||| |||||||||||||| || | || || ||||| || || || | ||| Sbjct 77167 TAGGCGACGGCCTCATCGGGGTTGATGCTCTTGTTGAGTTCCTTGCCCGAGAAGAAGTCC 77226 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | | || | || || || || || || || ||||| | ||||| || | Sbjct 77227 GAAAGGAGCTTCTGGACCTTGGGAATACGGGTAGAGCCTCCGACGAGGACGATGTCGTGG 77286 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || | ||||| || ||||| | ||| || || | || || || || ||||| ||| Sbjct 77287 ACCTGGGATTTGTCCATCTTGGCGTCACGGAGAGCCTTCTCAACGGGGTCCATGGTGTTA 77346 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | || ||| |||||||| || || |||||||| ||| || ||||| || Sbjct 77347 CGGAAGAGATCAGCACAGAGTTCCTCGAATCGGGCACGGGTGATGTTAGTGTAGAAGTCG 77406 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAAT---------GGTTGTTT---GTGCCG----- 7328 | |||||| | | || || |||||||| ||||| | || | | Sbjct 77407 ATTCCGTCGAAGAGGGAGTCGATTTCAATGCTGAAATGGGTTGGATGAGGTTCTGAAAAG 77466 Query 7329 -----TCGAAGA-TAAC------------------------GTTCGCTTTGCGCGCTCAC 7358 | |||| | || || ||||| || || || | Sbjct 77467 CGGGCTTAAAGACTTACCTAGCCTGGGATGAGCTGGACAGAGTGCGCTTGGCACGTTCGC 77526 Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA---ATATCTTTCTTATGTT 7415 | || || || | || || || ||||| | ||| |||| | || ||||| || | Sbjct 77527 AAGCGGTGCGAAGTCGTCGGAGAGCACGGGCGTT---GGAAGCCAAGTCCTTCTTGTGCT 77583 Query 7416 TACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCA 7475 | || || ||||| | |||||| | | | |||||| |||||||| || | Sbjct 77584 TGCGCTTGAACTCGGCGACGAAGTGGTTCACCATGCGGTTATCGAAGTCTTCACCTCCGA 77643 Query 7476 AGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACG 7535 || || || || ||||| | ||||||||| ||||| || | || ||| | | | | Sbjct 77644 GATGGGTGTCTCCAGCGGTGGATTTGACTTCGAAGATTCCATCCTCGATGGTCAGGATGG 77703 Query 7536 AAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGT 7595 | ||||| || |||||||| || || || || || | || || || ||| | | Sbjct 77704 ACACATCGAATGTACCACCTCCGAGATCGAAGATCAAGACATTGCGCTCTCCGTGTCCCT 77763 Query 7596 TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGT 7655 |||| || | || || ||||| || ||||| || || || || || || || || || Sbjct 77764 TCTTGTCCAATCCATAGGCGATGGCGGCCGCGGTGGGCTCGTTGATGATTCGGAGGACGT 77823 Query 7656 TCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 | || ||||| || | | | ||||| || || || ||||| || || || ||||| | Sbjct 77824 TAAGTCCAGCGATGGCTCCGGCATCCTTGGTAGCCTGTCGCTGACTGTCATTGAAGTAAG 77883 Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775 | || || || | ||| |||||| || | ||||| | | || ||| | || | Sbjct 77884 CAGGAACTGTGATGACGGCGTCCTTGCAAGAGGTTCCGAGGAAAGCCTCGGCGGTCTCCT 77943 Query 7776 TCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGT 7835 |||| ||| | |||||||| || || ||||| |||| | || |||| |||||| | Sbjct 77944 TCATCTTGATGAGAACCATTGACGAGATCTCCTCAGGTGTGAAAGTCTTCGATTCACCCT 78003 Query 7836 TAAAATCAACTTCAATCATGGGTTT--AT-CCGCAGCACCGGGGATAACCTTATACGACC 7892 | | || || | | | | || || || || | |||| ||| || || | | || Sbjct 78004 TGTAGTCGACCTGGACCTTAGGCTTGGATCCCTCGGCAC---TGATCACTTTGAAGGGCC 78060 Query 7893 AATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTG 7952 | | ||||| ||| || || |||| ||||| | |||||| ||||| || | Sbjct 78061 AGTGCTTCATGTCGGACTGCACTGCGGGGTCATCGAACTTGCGTCCGATGAGACGTTTGG 78120 Query 7953 CATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAA 8012 | || || || ||||| | |||||||| || |||||||| || || || ||||| | Sbjct 78121 CGTCGAATACAGTGTTGTGAGGGTTCATCGCCACCTGGTTCTTTGCGGCATCTCCGATGA 78180 Query 8013 GACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 |||| || | | || || || ||||| || |||||||| || || || ||| Sbjct 78181 GACGCTC---AGTGTCTGTGAAGGCGACATATGATGGGGTTGTGCGGTTACCT 78230 >seq7 Length=19238 Score = 113 bits (124), Expect = 6e-20 Identities = 192/276 (70%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 ||||||||||| || || || |||| || | ||||| |||||| | || || | | | Sbjct 2012 GAAACATCAAAAGTTCCTCCTCCCAAATCGTAGATGAGGACGTTCTTCTC-TCCTTTCAG 1954 Query 7595 TTC-TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 || | || | ||||| || | ||| || ||||| || || || || ||||| | | Sbjct 1953 CTCGCTGTCCAAGCCGTAAGCCAGAGCGGCAGCCGTAGGCTCGTTTATGATACGCATAAC 1894 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| || || ||||| || | || ||||| || || || || || |||||| ||||| Sbjct 1893 GTTGAGTCCTGCAATCTTTCCGGCGTCTTTGGTAGCCTGGCGCTGGTTATCGTTGAAGTA 1834 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||||| ||||| | || |||||| ||||| | || || ||| ||| || | || Sbjct 1833 TGCCGGTACCGTAATCACGGCGTCCTTGACTGGATGGCCCAGGAACGCTTCGGCCGTTTC 1774 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || || || |||||||| || || | ||| Sbjct 1773 CTTCATCTTCGTCAGGACCATCGACGAGATTTGTTC 1738 >seq1899 Length=56558 Score = 105 bits (116), Expect = 8e-18 Identities = 186/269 (69%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 7880 ACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCG 7939 ||||| | | |||| || || ||||| ||||| | || || |||| | ||| Sbjct 41889 ACCTTGAATGGCCAAAGCTTGATGTCGTCCTGGACAATCTTCTCAGAGAACTCCCGGCCG 41948 Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999 || || ||||| || || || || ||||||| ||||| | | ||||||||||| Sbjct 41949 ATGAGTCGCTTGGCGTCGAAGACGGTGTTTTCCGGGTTGGTCGTCAGCTGGTTCTTCGCG 42008 Query 8000 GCGTCCCCGATAAGACGTTCATTAT--TTTCCGTA-AACGCGACGTACGATGGGGTCGTT 8056 ||||| ||||| ||||| ||| | | |||| || |||||||| || ||||| | Sbjct 42009 GCGTCTCCGATGAGACGCTCACCAGACTCTCCGGCGAAGGCGACGTATGAAGGGGTGATA 42068 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || ||||||||||| || || ||||| ||||| |||| | | || |||||||| Sbjct 42069 CGGTTTCCTTGGTCGTTGGCGATGATTTCGACGCGCCCGTTCTTGAAAACTCCGACGCAA 42128 Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145 || || ||||| | || || ||||| Sbjct 42129 CTGTAGGTGGTTCCCAGGTCGATGCCGAT 42157 >seq2488 Length=28486 Score = 100 bits (110), Expect = 4e-16 Identities = 368/587 (63%), Gaps = 57/587 (10%) Strand=Plus/Minus Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || ||||| ||| ||||| || || | |||| || || |||||||| || Sbjct 19490 TTGATGATCCGAAGCACGTTGAGGCCGGCGATCGCCCCCGCGTCCTTGGTCGCTTGACGC 19431 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| ||||| ||||| || || | || |||||| | || || || Sbjct 19430 TGGGAGTCGTTGAAGTACGCCGGTACGGTGATAACGGCGTCCTTCACAGGGACTCCCAGG 19371 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 | | || ||| | || ||||| ||| | || ||||| || || || ||||||| | Sbjct 19370 AAGGCCTCGGCGGTTTCCTTCATCTTGATGAGGACCATGGAAGAGATTTCTTCAGGGGTG 19311 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTAT---CCGCAGCACCG 7873 ||| ||| |||||||| | | ||||| | || | |||| || || |||||| | Sbjct 19310 AACGTTTTGGTTTCACCCCTGTACTCAACCTGAACCTTGGGCTTGGAGCCCTCAGCACTG 19251 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | || || | | ||| | ||||| || |||||||| ||| || ||||| Sbjct 19250 ---ACCACTTTGAAGGGCCAGTGCTTCATGTCCGCTTGGACCGCTTGTTCATCGAACTTG 19194 Query 7934 CTTCCGATAAGACGCTTTGCATC------------------------------------- 7956 | || ||||||||||| || || Sbjct 19193 CGGCCAATAAGACGCTTGGCGTCTGCAAGTAAACTAGATTAGAAACGTTTAGAGAAAGAA 19134 Query 7957 AAAAACT-----------GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 ||| ||| ||||| |||||||||| || |||||||| |||||||| Sbjct 19133 AAAGACTTACCGAACACAGTGTTGATGGGGTTCATCGCCACCTGGTTCTTGGCCGCGTCT 19074 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 ||||| ||||| || | | |||| || || ||||| || || || || | || ||| Sbjct 19073 CCGATGAGACGCTCCGTGT---CCGTGAAGGCCACGTAGGACGGAGTGGTCCTGTTGCCT 19017 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125 |||||||| || || || || || ||| ||| ||||||| || || || || || Sbjct 19016 TGGTCGTTGGCGATGATCTCCACTTTCCCGTGTTGGAAGACGCCAACACAGGAGTAAGTG 18957 Query 8126 GTTCCTAAATCAATACCGATTGCTTGAGTCATTTTATATATTTTGTA 8172 || || | || || || || || | |||||||| | | |||| || Sbjct 18956 GTGCCAAGGTCGATTCCTATGGCGTTCGTCATTTTTTTTCTTTTTTA 18910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635110062245760