Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1889 145 9e-30 seq4 96.9 4e-15 >seq1889 Length=309471 Score = 145 bits (160), Expect = 9e-30 Identities = 630/984 (64%), Gaps = 57/984 (6%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| ||||| || ||| | || || || |||||||| || ||||| Sbjct 13790 GTTCAGGGACTGCGACTGGTCTATGTAGGCGCCGCGGTCGGCCGCCATCTCCATGATGTC 13849 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTG-ATATCATCGGGAATGTCCA 109618 ||| || || |||||||| ||||||||||| | |||| | ||| | ||||||||| Sbjct 13850 CTTCTGAGAGATCTCCCAGACCGTCTTGTACAAGT-CTTGCAGATCCTTGGGAATGTCGG 13908 Query 109619 CGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTT--CGACC- 109675 ||||| || || || ||||| |||| | |||| || ||| | ||| || || Sbjct 13909 CGATGCCCTGGATGGATCCACC---CTTCGCGATGATCTCGTTCTTGAGTTTGTCGTCCC 13965 Query 109676 --AG----AGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATT 109729 || || | ||| || | | | |||| || |||||| | || | Sbjct 13966 ACAGGTTCAGCTCAACCA-----AGTCCTTGAGCAAG-TGAGGGTTGACGATCTGGAAGT 14019 Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789 | || | ||| || ||| ||||||||| | ||||| || |||| |||| |||| Sbjct 14020 CGCCGGAAAGGACACGACGGCTGTAGATGTTGGAGGTGTACGGCTCGATCGACTCGTTGT 14079 Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 | || |||||||| |||||||| || |||||||| ||||| | ||||| ||||| |||| Sbjct 14080 TTCCGAGGATTTGAGCAGTGGACGCCGTGGGCATCGGAGCAACCAGAAGGCTGTTGCGGA 14139 Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACT---AAATT 109906 || | | | | | ||| || | |||| || | | | | || Sbjct 14140 CTCCGTGCTTGGCGATCTTCTCCTTCAAAGTAGCCCAGTCGCACTGGTCCGTGGGAACCA 14199 Query 109907 TAGTCTCACCATCC---------CACATATCTGGTTGAAGTACACCCTCAGCAG-CAGGA 109956 | || || ||| ||||| || ||| || || || | || | | ||| Sbjct 14200 CGGGCTTGCCGTCCTCGGTGGTCCACATCTCGTATTGGAGCACGCCG-CGGCTGACCGGA 14258 Query 109957 GAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGT 110016 || || | | | | || || | || | | ||| |||| |||| | |||| ||| || Sbjct 14259 GAGCCTTCGTAGGTTTCATAGGGTCCGTACAGCTCCGCCAGCTCGCAGGAAGACTCGAGG 14318 Query 110017 GCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCG 110076 | || || || || || || || || | |||||| ||| | || || | | Sbjct 14319 GAGGCGTGGTAGATGGTTTCGAAGATTCGCTTGTTCATGTCGCGGGCTTCAGGACTGGTG 14378 Query 110077 AAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGG 110135 ||||| | | | || || ||||| | ||||| || ||||| || |||| |||||||| Sbjct 14379 AAGGGGA-AGCGCATCAGCATAAAGGCGTCCGCGAGTCCCTGGACTCCGATTCCAATGGG 14437 Query 110136 GCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGAT 110192 || ||| | |||| ||| | || ||| || || ||| |||||| |||||| Sbjct 14438 ACGGTGCCGCTTGTTGGAGGTTTCGGC---TTCAGGAACAGGATAATAGTTGCCGTCGAT 14494 Query 110193 GACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA 110252 || | ||||| || || || ||| ||||| | ||||| || ||||| ||||| Sbjct 14495 GATCTTGTTGAGGTTGCGAGTGACGACCTTAGTGATCGCGTGGAGCTTCTCGTAGTCGAA 14554 Query 110253 CGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGA 110312 || || |||||| ||| || | | ||||| || || | |||||||| | Sbjct 14555 GGTCTTGTCCTCCTT---GACGAATCGGTTCAACGCAATCGAAGCTAAGTTGCACACGG- 14610 Query 110313 AGTCTCGTCTTTGTCGGT------GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTT 110366 || ||| ||||| ||| | | || || || |||| |||||| | ||| Sbjct 14611 -----CGACTTCGTCGGGAGACGAGTACTGGACGATCTCAGTGCACAGGTTGGAGCACTT 14665 Query 110367 AATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTA 110426 || |||| ||||| ||| ||||| ||| |||||| || ||||| ||||||||||| Sbjct 14666 GATCGTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTA 14725 Query 110427 TGGGGTACCAGTTTCCGTCTGTGA 110450 || || |||||||| |||| || Sbjct 14726 AGGAGTTCCAGTTTCGATCTGGGA 14749 >seq4 Length=195412 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/246 (70%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || | ||||| |||||||| || || || || || || ||| ||||| Sbjct 71376 GGCAAAGTCACGGTGAAGGCCTTCATCGCGGGAAATCAGTTCGTTGCTGTGAGTGAGTCC 71317 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||||||||||||| || ||||| |||||||| Sbjct 71316 AGGCATGAGGCCTCGCTTCTTGAGCCAAAAGATGGCAGCGAACGACCCAGAGAAGAAGAT 71257 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAG--CAAAAGGTCGAG-ACTTGT---C 119668 || || || |||||| ||| ||| |||| || | ||| | | | ||||| | Sbjct 71256 TCCTTCAACGGCGGCGAACGCG-ATA-ACGC-GAGTTCCAAATGAAGCGTTCTTGTCGCC 71200 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 || ||| |||||||||| ||||| || ||||| |||| |||||||| | Sbjct 71199 GATCCAGCGCAGAGCCCAGTCCGCCTTCTTCTTGATGCAAGGGAACTCGTGGATGGCGTT 71140 Query 119729 GAAAAG 119734 |||||| Sbjct 71139 GAAAAG 71134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588954914659200