Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_014900.1 Length=40986 Score E Sequences producing significant alignments: (Bits) Value seq2599 190 5e-44 seq2629 152 1e-32 seq2774 120 8e-23 >seq2599 Length=15424 Score = 190 bits (210), Expect = 5e-44 Identities = 368/533 (69%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 20306 CAGCATGACTGGCTTAATGGGTGGCTTGAGCTATGGGGGGCATGGGTTTATTCGGGTCGT 20365 ||||| |||||| || || ||| | | | ||||||||||||||| | || | Sbjct 11627 CAGCAGGACTGGATTGATAACTGGTTAAATTTGTGGGGGGCATGGGTTCACAGTGGCAGA 11686 Query 20366 CTGGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTAGAGCCGGG-AAG 20424 | || |||||| || | | | || ||||||||| || || ||||| | ||| Sbjct 11687 ATCGATAAGCGCCAGATAAACATGATTTATAAGTTCATGATGACTGTTGAGCCTCGCAAG 11746 Query 20425 AGTTATGACAAGACCAATGTGCAATGATGATGATGGAATGTTGATTTCTCAGGTCGTCGA 20484 | | ||| | || ||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 11747 GGGCAAGACC-GCCCTGTGTGCAATGATGATGATGGTATGTTGATTTCTCAGGTGGTCGA 11805 Query 20485 TTCCGTCATGTACATTGACAAGAAAGCCTTTGGCATCCTCCTCAGCTACTACGCTCATGG 20544 | |||| |||| ||||||| | ||||||| ||| || | ||||||||||||||||| || Sbjct 11806 TGCCGTTATGTGCATTGACCAAAAAGCCTATGGGATTTTACTCAGCTACTACGCTCACGG 11865 Query 20545 TTCATCCAAGCGAGCAATTGCATCCTACTATCACGCGACTGCAAAGCCACGCAAGATG-T 20603 |||| |||| ||||| || | || |||||| || ||| || || |||| ||| | Sbjct 11866 CGCATCGAAGCTGTCAATTTCAACTTATTATCACAAGATTGCGAAACCCCGCAGAATGAT 11925 Query 20604 GTGGACGGGGTGGCGATGGATGGAGAAAACCTTCACTGGCAACCTGTAGAAATGAAATTG 20663 | | || ||||| | | || || ||||| | | || ||| | |||| | | Sbjct 11926 GACG-CGCTCTGGCGGGCGCTTAAGGAAGCCTTCTCGTGGGACATGTCGCCGTGAAGTGG 11984 Query 20664 ACGACATCCTGAAAGCGTCATTATTT--GTTTTATACCAGCCAATGCAAAATGCTTTCAA 20721 | || || ||| ||| || | ||| | ||||| ||||| |||||||||| || || Sbjct 11985 ATGAAATTCTGGCAGC--CAGTGTTTACCTATTATATCAGCCTCTGCAAAATGCATTTAA 12042 Query 20722 AATGCGTAAACGTGTTGAGAAAGTTAAGCATGTTGCTGTTAAAAGTCTTGACATGCAATT 20781 ||||||||||| |||||| | || | |||| | || || |||||| ||| Sbjct 12043 TTCACGTAAACGTGTAGAGAAAATCAAAAAGATTGC-CTAGAACGTGTTGACA-CTAATG 12100 Query 20782 ATCCATTTAGCCATAATTAGAGGGTAAGCTGCCGTTAGTGACTCTTAAGTTGC 20834 | | | | ||| |||||| || | | |||||| |||| ||||| || || Sbjct 12101 AGCAAATGAGCAATAATTTTTGGTAAGGTTGCCGTCAGTGTTTCTTAGGTGGC 12153 >seq2629 Length=15125 Score = 152 bits (168), Expect = 1e-32 Identities = 238/340 (70%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 19090 ATGGCTAAACCAGCGCGAAGGAAATGCAAAATCTGTAAGGAATGGTTTCACCCAGCATTC 19149 |||||||| ||| |||| || |||||||| |||| || |||||||| || | | Sbjct 338 ATGGCTAACCCAAGGCGACGGCGCTGCAAAATATGTAGAGAGTGGTTTCATCCCAAGTAC 279 Query 19150 TCAAATCAGTGGTGGTGCTGCCCGGAACACGGAACTCAATTAGCACTAGAGCGACGAATC 19209 |||| |||||| |||| || |||||| | |||||||| | ||||||||| Sbjct 278 GAAAATATAGAGTGGTGTAGCCCAGAGCACGGAGCAGAATTAGCAATCAAGCGACGAAGT 219 Query 19210 AAAGAACGCGAAAAAGCGGAAA--AAGCAGCAGAGAAGAAACGACGACGAGAGGAACAGA 19267 || || | |||||| ||| || | ||| ||||| || | | | | ||| | Sbjct 218 AAGGAGAGAGAAAAACTAGAAGCCAAACTCAAGA-AAGAACAGAAG-CAAAAAGAAGTAA 161 Query 19268 NNNNNNNNNNTAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTA 19327 |||||| || || || | || |||| ||||||||||| ||||||| Sbjct 160 AAGCCCGCGATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTA 101 Query 19328 AACAAGCCCAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTG 19387 ||||||| ||||||||||| ||||| | ||||||||||||||||| || || ||||| Sbjct 100 AACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCA 41 Query 19388 TCTCGTGCGGAACGCTCACGTCTGCTCAGTGGGATGCCGG 19427 | || ||||||||| | ||||||||||||||||| || Sbjct 40 TATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 96.9 bits (106), Expect = 9e-16 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16583 GTCGATTACCTGACACTAATGACCGCTGAAAAGGCCGATCGTAACGACCTTGCTTACGGC 16642 || ||||| | || || |||| |||| || || || || ||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 16643 ATGATTACTAAGGGACTGAAGAACCTTTCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 16700 || || || || || ||| | || | |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 16701 TGACGCAGCTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGCGACT 16760 | || ||||| |||||| ||| ||| ||||||| || || || | |||||||| Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 16761 CCCGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTTGGTAT 16809 ||| ||||| || || || || |||||||||||||| ||| | || || Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 >seq2774 Length=20939 Score = 120 bits (132), Expect = 8e-23 Identities = 72/76 (95%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 20853 GGGTCAGTCGTATAAAGGTCATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGAGTC 20912 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 20146 GGGTTAGTCGTATAAAGGTTATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGATTC 20087 Query 20913 CACGCTGTCCCGCCAA 20928 |||||| ||||||||| Sbjct 20086 CACGCTATCCCGCCAA 20071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131029143547264