Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq2606 208 2e-49 >seq2606 Length=3143 Score = 208 bits (230), Expect = 2e-49 Identities = 381/555 (69%), Gaps = 20/555 (4%) Strand=Plus/Minus Query 12169 GCGAAATCGGCGAGGTAACGGTCGGTGATGCGTTGGCGCAGCATCAGGTTTTCGATCGGC 12228 |||||||| ||||||| || || ||||| ||||| | ||||| |||||| | ||| Sbjct 1368 GCGAAATCCATCAGGTAACTATCTGTAATGCGCTGGCGTAACATCATGTTTTCCAGTGGC 1309 Query 12229 GGAACGGGCGTGTAGTCGTAATCGATCGCCAGCTTGCCGGCCTTGAGCGATTCGACGGGG 12288 || || || || |||||||||||||| | ||| ||||| || || || | || | Sbjct 1308 GGTACAGGGGTATAGTCGTAATCGATGGTCAGTTTGCCTGCTTTCAGGGTGTCTTTATCG 1249 Query 12289 TTCGCGCTGTCGTCGTACCAAGC--CGAGCCGCCGAGCAGATAGCCGTTTGCGATCAGCT 12346 || ||||||| ||||| || ||| ||| | | | |||||| || |||| | Sbjct 1248 TTGATTTTGTCGTCATACCA-GCAACGA-CCGTCAATGATGTAGCCGCCCGCTTTCAGTT 1191 Query 12347 CGCGGAATTTCGCGTTGATGCTTTCGATCATGTCTTTCACGATCGACGGGTGCATCGGCT 12406 | ||||| || || ||||||| |||||| ||||| || | ||| ||| || ||| | Sbjct 1190 CACGGAACTTAGCATTGATGCCTTCGATAATGTCGCGTACCAGCGATGGGGTCAGCGGTT 1131 Query 12407 TGTCGACATAAACCATGTGTGCTTCCGCCATCGTGTCGGCGAGCACTTGCGCGGTGCGCG 12466 |||||| ||| || || || ||||| ||||| || || || || ||||| || | Sbjct 1130 TGTCGATTGCCCACATATGCGCGTCAGCCATGGTGTCAGCCAGTACCTGAGCGGTACGGG 1071 Query 12467 TGTAGTTCTCGAATGCGAACAGCGGATCATCCGA------------GCAGGTGCGCGAAC 12514 ||||| | ||||||| |||||| | || || || ||| ||||| |||| Sbjct 1070 TGTAGCTTTCGAATGGGAACAGTGAGTCCTCAGAAGCAGAGCCAGCGCAAGTGCGTGAAC 1011 Query 12515 CCCAGAAGCGATAGCCCGTCGAGTTGATGAGCGTCGTCACATCGTTCTCGTTGAGGTAGC 12574 ||||||| ||| | || | | ||| || || || | | |||| ||| || Sbjct 1010 CCCAGAAACGAAAACCGTTTTTGCGGATCAGTGTTGTGATGTGATTCTGGTTCAGCAGAT 951 Query 12575 CGGCATCGGTCGCGGGGTCTTGCAAGTCCCAGAAAACATCCTTGCTGATA--CCCGTAAC 12632 | || || || | | |||||| |||||||| ||||| || |||| ||||| || Sbjct 950 CAGCCTCAGTTCCAGTCGCTTGCAGATCCCAGAAGACATCA--GCAGATAGACCCGTTAC 893 Query 12633 GCCATTGATGCCGACATTCGAAATCGTCTTGTGCCAGCCCGTTTCCTCGTCGATCTTGGC 12692 ||| || | || ||||| || | || ||||||||||| ||||| |||||||| ||||| Sbjct 892 GCCGTTAACACCCACATTGGATAGGGTTTTGTGCCAGCCGGTTTCTTCGTCGATTTTGGC 833 Query 12693 GCGCAAGCCGAGCGC 12707 |||||||| || || Sbjct 832 ACGCAAGCCCAGTGC 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103289287011872