Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2563 136 5e-27 >seq2563 Length=28365 Score = 136 bits (150), Expect = 5e-27 Identities = 250/362 (69%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 154767 ATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAA 154826 ||||| || |||| ||| || | || | |||||| | ||||| || || || | | Sbjct 7870 ATGGCTGGCATGACAGTGGTTGTGGTTGATTGTGATAAAGATGGCAATATCGATCTGACC 7929 Query 154827 GATCTAGAGAAGAAAGCAATCATGAATACATT--TGAACTGTCATGTATTATGATTACAT 154884 || ||| || | |||||| | || || | ||||||| | ||||| ||| | || | Sbjct 7930 GACCTACAGGAAAAAGCAGAAA--AACACCGTGATGAACTGGCCTGTATCATGGTGACCT 7987 Query 154885 ACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATG 154944 | || || || || ||||||| |||| | ||| | ||| | ||| | || |||| Sbjct 7988 ATCCGTCAACTCACGGTGTATATGAAGAAACTATTCGTCAGGTTTGTGACATTATTCACC 8047 Query 154945 ACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAA 155004 | ||||| |||||||| || |||||||| || ||| | ||||| ||||| || | | | Sbjct 8048 AGAATGGCGGTCAGGTTTACCTTGATGGCGCTAATATGAATGCTCAGGTTGGCATCACTA 8107 Query 155005 AACCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATT 155063 || | ||| ||||| ||||| | || || || | |||||||| ||||||||| Sbjct 8108 CGCCGGGCTT-TATCGGTGCTGATGTTTCACACCTTAATCTGCATAAAACCTTCTGTATT 8166 Query 155064 CCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCA 155123 |||||||| || || ||||| || | || || || ||||| ||| || || ||||| Sbjct 8167 CCACATGGTGGCGGTGGTCCGGGTATGGGACCAATCGGTGTGAAAAAGCACCTTGCACCA 8226 Query 155124 TT 155125 || Sbjct 8227 TT 8228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579192064181760