Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2563 170 2e-37 >seq2563 Length=28365 Score = 170 bits (188), Expect = 2e-37 Identities = 284/406 (70%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 159398 TGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAG 159457 |||| ||| || || ||||| || || || ||||||||| ||||| || |||| || Sbjct 7826 TGATCCCAAGCTCTGCGCATGGTACAAACCCGGCATCAGCACATATGGCTGGCATGACAG 7885 Query 159458 TTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAG 159517 | || | || | |||||| | |||||||| || || | | || ||| || | |||| Sbjct 7886 TGGTTGTGGTTGATTGTGATAAAGATGGCAATATCGATCTGACCGACCTACAGGAAAAAG 7945 Query 159518 CAATCATGAATACATT--TGAACTGTCATGTATTATGATTACATATCCATCTACACATGG 159575 || | || || | ||||||| | ||||| ||| | || ||||| || || || || Sbjct 7946 CAGAAA--AACACCGTGATGAACTGGCCTGTATCATGGTGACCTATCCGTCAACTCACGG 8003 Query 159576 TGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGT 159635 ||||| |||| || || | ||| | ||| | ||| |||| ||||||| |||||||| Sbjct 8004 TGTATATGAAGAAACTATTCGTCAGGTTTGTGACATTATTCACCAGAATGGCGGTCAGGT 8063 Query 159636 ATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTAT-G 159694 || |||||||| || ||| | ||||| ||||| || | | | || | ||| | Sbjct 8064 TTACCTTGATGGCGCTAATATGAATGCTCAGGTTGGCATCACTACGCCGGGCTT-TATCG 8122 Query 159695 GTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAG 159754 |||| ||||| | || || || | ||||| || ||||||||||||||||| || || | Sbjct 8123 GTGCTGATGTTTCACACCTTAATCTGCATAAAACCTTCTGTATTCCACATGGTGGCGGTG 8182 Query 159755 GTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATT 159800 |||| || | || || || ||||| ||| || || ||||||| Sbjct 8183 GTCCGGGTATGGGACCAATCGGTGTGAAAAAGCACCTTGCACCATT 8228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588030147767040