Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2252 114 8e-21 seq2162 105 4e-18 seq1739 86.0 4e-12 >seq2252 Length=1130325 Score = 114 bits (126), Expect = 8e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| ||| ||||| ||||| ||||| ||| | || |||| || Sbjct 562948 AACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATCTTC 563007 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||| |||||||| || || | || ||||||||| | || | ||||||||||| Sbjct 563008 CAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTG 563067 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | ||| ||| || || |||| ||| || || || Sbjct 563068 GATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTT 563127 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||||| ||||| |||||||| |||||| Sbjct 563128 TCCCGTGAGGGTCTTGACAAAGATTTGCATA 563158 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | | || |||| || ||||| |||||||| || Sbjct 563547 TTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 563606 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||||||| | || | ||||||||||| ||||| |||||| Sbjct 563607 GATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTT 563666 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| ||| || || |||| ||| ||||| ||||| || | ||||||||| Sbjct 563667 CTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCAC 563726 Query 34970 AAAGATCTGCATA 34982 ||||| |||||| Sbjct 563727 GAAGATTTGCATA 563739 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| ||| | || |||| || ||||| |||||||| || Sbjct 563775 TTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAA 563834 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | ||||||||||| ||||| |||||| Sbjct 563835 GATCAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTT 563894 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| ||| || || |||| ||| ||||| ||||||||||| ||||| || Sbjct 563895 TTCGATAGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCCGTGAGGGTCTTGAC 563954 Query 34970 AAAGATCTGCAT 34981 ||||| ||||| Sbjct 563955 GAAGATTTGCAT 563966 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| ||||| ||||| ||||| || | | || |||| || ||||| Sbjct 562223 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTG 562282 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 |||||||| || || || || ||||||||| | || | |||||||| || ||||| Sbjct 562283 CTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTT 562342 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 |||||| | || | || |||| || || | ||| ||||| ||||| || Sbjct 562343 TGCCTTGACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTCTTTCCGGT 562402 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 | ||| ||||| ||||||||||| Sbjct 562403 CAAAGTTTTCACGAAGATCTGCAT 562426 >seq2162 Length=74254 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||||| || ||| || || ||||||||||| | || | | || |||| || Sbjct 49079 ACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAG-TGCGGCCATCCTC 49021 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || | ||| ||||| ||| | || | || || ||||| Sbjct 49020 AAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTG 48961 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| ||||||| | | ||||| ||| | |||| || || | || || ||||| Sbjct 48960 AATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAATGTGATCGTTTT 48901 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| |||||||| || |||||||| Sbjct 48900 GCCCGTGAGGGTCTTCACGAAAATCTGCAT 48871 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||||||||| | |||| | || |||| ||||| || |||||||| || Sbjct 48833 TCCTTCTGGATGTTATAGTCGCTCAAGG-TGCGGCCATCCTCCAGTTGCTTTCCGGCGAA 48775 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||| || ||| | || | || || ||||| |||||| ||| ||| Sbjct 48774 GATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTCTTGAATCTTAGCTTTCACGTT 48715 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || || ||| | ||||| |||| || ||||| ||||| || | || ||||| Sbjct 48714 CTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGGTCTTTCCTGTCAACGTTTTCAC 48655 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 48654 GAAGATCTGCAT 48643 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-C 34811 ||||||||| | | | ||| | ||||| || ||| ||||| ||||| ||||| | Sbjct 48643 TTCCTCCCCGAAGGCGAAGAACTAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGC 48584 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || | | || |||| || ||||| ||||| || || || |||| |||||||| | Sbjct 48583 TCAAAG-TGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCAGGA 48525 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | ||||||||||| |||||| || ||| | || || || ||||| Sbjct 48524 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGAGTCTGAACCCTCA 48465 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || | ||| || || || ||||| || |||||||| ||||| ||||| || Sbjct 48464 ACCTCAAGGGTGATCGTCTTGCCCGTAAGCGTCTTCACGAAGATTTGCATCTT 48412 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | || | | || |||| |||| ||| || || ||||| Sbjct 49289 TCCTTCTGGATGTTGTAGTCACTCAAAG-TGCGGCCATCTTCCAACTGCTTGCCAGCAAA 49231 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || |||||||| ||||| ||| ||| Sbjct 49230 GATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGGATCTTAGCTTTCACGTT 49171 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| |||| || || | || || ||||| || || |||||||| || Sbjct 49170 TTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATCGTTTTGCCTGTCAGAGTCTTGAC 49111 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 49110 AAAGATCTGCAT 49099 >seq1739 Length=92152 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || |||||||| || || |||||||| ||| | || | || |||||||| |||||| Sbjct 76220 TTACCGGCAAAGATGAGCCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76161 Query 34899 TGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCG 34956 ||||| || || |||| || | ||| || || || | ||| ||||| || || | Sbjct 76160 GCCTTGAC--ATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGG 76103 Query 34957 TGAGAGTCTTCACAAAGATCTGCAT 34981 |||| |||||||| ||||||||||| Sbjct 76102 TGAGCGTCTTCACGAAGATCTGCAT 76078 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || |||||||| || || || || ||||| | || | || || ||||| ||||||| Sbjct 76496 TTACCGGCAAAGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTC 76437 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 |||||| | | || | |||| ||| || || || | ||| ||||| || || ||| Sbjct 76436 GCCTTGACGTTTTCAATTGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTG 76377 Query 34959 AGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| ||||||||||| Sbjct 76376 AGCGTCTTCACGAAGATCTGCAT 76354 Score = 82.4 bits (90), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || |||||||| || || |||||||| ||| | || | || |||||||| |||||| Sbjct 76770 TTACCGGCAAAGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76711 Query 34899 TGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCG 34956 ||||| || || |||| || | ||| || || || | ||| ||||| || || | Sbjct 76710 GCCTTGAC--ATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGG 76653 Query 34957 TGAGAGTCTTCACAAAGATCTGCATA 34982 |||||||||| || || ||||||||| Sbjct 76652 TGAGAGTCTTGACGAAAATCTGCATA 76627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324622268664192