Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq2270 1169 0.0 >seq2270 Length=26257 Score = 1169 bits (1296), Expect = 0.0 Identities = 1229/1616 (76%), Gaps = 0/1616 (0%) Strand=Plus/Minus Query 609 ACCCATAACGTCATGCTGGTGCCAACCAGTGACAACGTGGATGACTGGGAGGCGGCAGCG 668 || || ||| |||||| ||| || | | || | ||| ||||| ||||| | || Sbjct 23653 ACACACAACATCATGCCGGTTCCTGCTTGCGATAGCGTCGATGATTGGGAAAAAGTGGCT 23594 Query 669 CAGAAACAACAGGACGGGGTGCTCGGTGGATGAATTACAAAGCTGTATGGAAGCCACTGC 728 |||||||| |||| || ||| | |||||||||||||||| | || ||||| || || | Sbjct 23593 CAGAAACAGCAGGGCGAGGTATTGGGTGGATGAATTACAATGTGGTTTGGAAACCGCTAC 23534 Query 729 CTGGATCTCAGTCCCTGGCGCTGAGCTGCCCGTGTAACGAAATCCTGTTCGAGGGCACTC 788 | || || ||||| | || | || ||||||||||||||||| |||| || || || | Sbjct 23533 CCGGCTCACAGTCGTTAGCATTAAGTTGCCCGTGTAACGAAATTCTGTATGAAGGTACAC 23474 Query 789 GCGGACCGGGCAAGACAGCTGCGCAGTTAGCCAGGTTCAGGCGTAATGTCGGCGTAGGTT 848 | || || ||||| ||||| || || ||||| | || | || ||||||||||| || | Sbjct 23473 GAGGCCCCGGCAAAACAGCCGCACAACTAGCCCGCTTTCGACGCAATGTCGGCGTGGGAT 23414 Query 849 ATGGCTCGTTCTGGCGCGGCGTCATTTTCGACACCGAGTATAAAAACCTTGCCGACATCA 908 | || || |||||||| || || |||||||| || || || ||||||||||| ||||||| Sbjct 23413 ACGGTTCATTCTGGCGTGGTGTTATTTTCGATACTGAATACAAAAACCTTGCGGACATCA 23354 Query 909 TCACTCAGTCGAAGCGCATGTTTCGCCTGTTCAACGACGGTGCGCGCTATCTGTCATCTG 968 | ||||| || ||||| |||| |||| | || || || ||| |||| | | || | || | Sbjct 23353 TAACTCAATCCAAGCGTATGTATCGCTTATTTAAGGATGGTACGCGTTTTTTGGCGTCGG 23294 Query 969 CGAGCGAATTGCGATGGGTGTGGCCAACGGGCGAGGAGCTTCTCTTCCGCTTCGGCAAAG 1028 | ||||| || ||||| ||||||||||| || ||| | | || || || || |||| Sbjct 23293 CATCTGAATTACGTTGGGTATGGCCAACGGGTGAAGAGTTGTTATTTCGGTTTGGTAAAG 23234 Query 1029 AGGCAGACGACTACTGGGATTTCCACGGTCAGGAATTCCCGTTTATCGGCTTTAACGAGC 1088 |||| || ||||||||||| | |||||| ||||||||||| ||||||||||||||||| Sbjct 23233 AGGCTGATGACTACTGGGACTACCACGGGCAGGAATTCCCTTTTATCGGCTTTAACGAAT 23174 Query 1089 TGACGAAACAGCAGTCTCCAGAGTTCTATGAAATGATGTTCTCCTGCCGCCGATCATCGT 1148 | || |||||| ||||||| || ||||||||| |||||| || |||||||| ||||| | Sbjct 23173 TAACCAAACAGAAGTCTCCTGATTTCTATGAAGCGATGTTTTCGTGCCGCCGTTCATCAT 23114 Query 1149 TCAGGCCGGAAAACTACCCGCTGGAGAATGGCAAGTTATTGAGGCCAATCCCGCTGGAGA 1208 |||| || ||| | || ||||| || | || || || | ||| ||||||||||| | Sbjct 23113 TCAGACCAGAAGATTATCCGCTTGAAGACGGTTCTTTGTTAAAGCCTATCCCGCTGGAAA 23054 Query 1209 CGTTCAGCACGACCAACCCGTTCGGCATCGGGCATACCTGGGTGAAGAAGCGCTTCATTG 1268 | ||||| || ||||| || || || ||||| || || ||||| ||||| || || || | Sbjct 23053 CATTCAGTACAACCAATCCATTTGGTATCGGTCACACATGGGTTAAGAAACGGTTTATCG 22994 Query 1269 AGCCAGCGCCGCGCGGAACCGTGCAGCGCGACCGGCAAATGGTGTTCAACCCTCAGACAG 1328 | || || ||||| ||||| || || || ||||| |||||| ||||| ||||||| Sbjct 22993 AACCTGCACCGCGTGGAACGGTTATCCGTGAAACGCAAAAGGTGTTTAACCCGCAGACAG 22934 Query 1329 AACGAGAAGAGGAAATCACGCTGACCCGCGTGGCAATCCACGGCTCGTTCAAAGAGAACC 1388 |||||||||| || ||||| |||||||| || || | || ||||| |||||||| |||| Sbjct 22933 AACGAGAAGAAGACATCACCCTGACCCGTGTTGCTGTTCATGGCTCTTTCAAAGAAAACC 22874 Query 1389 CGTACCTCGATCCGCAGTACATCGCAACGCTGATGGCCATCAAAGACCCGAATCGCCGTA 1448 | ||||| || |||||||||||||| || ||||| |||||||||||| ||||| | | Sbjct 22873 CTTACCTAGACCCGCAGTACATCGCCACATTGATGAACATCAAAGACCCCAATCGAAGAA 22814 Query 1449 AGGCGTGGGTTGAGGGCTCGTGGGATGTTACCAGCGGCGGACGTTTCGACCATCTGTGGA 1508 |||| |||||||| ||||| |||||||| |||||||| ||||| || ||||||||||||| Sbjct 22813 AGGCATGGGTTGAAGGCTCTTGGGATGTCACCAGCGGTGGACGCTTTGACCATCTGTGGA 22754 Query 1509 ATGCCTCGCATCATGTCATCAAGCCATTCCGCATACCGGATAGCTGGACGGTCGACCGCT 1568 ||||| ||||| || |||||||||||| ||||||||||||||||| || || || | Sbjct 22753 ATGCCAATCATCACGTTATCAAGCCATTCAAAATACCGGATAGCTGGACAGTTGATCGTT 22694 Query 1569 CGCATGACTGGGGCGAATCGAAACCGTTTTCCAACCTCTGGTGGGCACGATCCGACGGAA 1628 | || |||||||| ||||| || |||||| |||| || |||||||| ||| ||||| | Sbjct 22693 CTCACGACTGGGGGGAATCAAAGCCGTTTGCCAATCTGTGGTGGGCTGAATCTGACGGGA 22634 Query 1629 CCGCCGCAGAACTGCCTGATGGCCGCCAGTTCTGCCCGCCTGCTGGGACGCTGATTCTTA 1688 | || ||| |||||||||||| || || || |||||||| | || | | ||| | | Sbjct 22633 CAGCAGCAACACTGCCTGATGGGCGTCAATTTTGCCCGCCATCAGGATCATTAATTTTGA 22574 Query 1689 TTGGCGAGTGGTACGGCTGCCCACCGGACGAGCTGAACAAAGGCCTGAATATGTCATCAA 1748 | |||||||||||||| ||||| || || || ||||| |||||||| ||||||||||| | Sbjct 22573 TAGGCGAGTGGTACGGTTGCCCGCCAGATGAACTGAATAAAGGCCTCAATATGTCATCGA 22514 Query 1749 CAAACGTCGCTAAGGGCGTTGCCTGGGTAGATAAACGACTGGTGGGCGATGAACTTGCTG 1808 | || || || ||||| || ||| | |||| || ||| |||| || || |||| | Sbjct 22513 CCAATGTAGCCAAGGGGGTGAAGTGGATTGATAGCCGCCTGATGGGTGAAGATGTTGCAG 22454 Query 1809 AGCCTGACGAAATCAAGCTTAACGGGGTGACGCAGGGGCAACTGAACATCATGCCTGGAA 1868 | ||||||||||| || | | | ||| || || || | || || ||||| || | Sbjct 22453 AACCTGACGAAATTAAACAGGGCAGTAAGACACAAGGCCAGTTAAATATGATGCCCGGTA 22394 Query 1869 TCTGTAAGAAGGTTACACCGGGCCCGGCTGACAGCGCCATTTACAATACAGGCGATGATG 1928 |||| || || || | |||| || |||||||| |||||| ||| ||||| ||| ||| Sbjct 22393 TCTGCAAAAAAGTGAGCACGGGTCCCGCTGACAGTTCCATTTTCAACACAGGAGATAATG 22334 Query 1929 AACTCTCCATTGCGCAGAAGATGGAGTCCCAGGGCGTTAAATGGCTTGAGGCAAACAAAA 1988 | ||||||||||||||||||||| |||||||| || ||||| ||||| || |||| Sbjct 22333 AGGACTCCATTGCGCAGAAGATGGAAAAACAGGGCGTGAAGTGGCTGGAGGCCAATAAAA 22274 Query 1989 AGCCGGGATCTCGCGTTAACGGCGCCGCTCTGTTTGCCGATATGCTCGAAGCTGTCAATG 2048 |||| || |||||| | || || ||| | | ||||| |||||||| || || |||| || Sbjct 22273 AGCCCGGTTCTCGCATCAATGGTGCCTCAATCTTTGCGGATATGCTGGAGGCAGTCATTG 22214 Query 2049 AAGGTAAGAAACTGGAATCCGGCATCCCGGAGAAACCTGCATTTTACGTATTCGACTACT 2108 | || ||| || ||||| ||| | ||||| || || || || || ||||||||| | | Sbjct 22213 AGGGCAAGCAATCAGAATCAGGCCTACCGGAAAAGCCCGCGTTCTATGTATTCGACCATT 22154 Query 2109 GCCGTGGCTGGATCAGCCGTGTGCCGGTACTCGTGCGCGACAGTAAAAACCCCGACGATG 2168 | | |||||||| |||||| | || || | ||||| |||| |||||| || || |||| Sbjct 22153 GTAGAGGCTGGATAAGCCGTATCCCCGTCTTAGTGCGTGACACTAAAAATCCTGATGATG 22094 Query 2169 TAGATACCCAACAGGAAGATCACGACTGGGATGCTACCCGATATGCCGTTCTGCAT 2224 | |||||| |||||||||| ||||| |||||||| || || ||| ||| ||||| Sbjct 22093 TTGATACCGAACAGGAAGACCACGATTGGGATGCAACGCGGTATCGTGTTTTGCAT 22038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158516208680384