Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq2599 170 4e-38 seq2629 123 6e-24 seq2680 104 5e-18 >seq2599 Length=15424 Score = 170 bits (188), Expect = 4e-38 Identities = 374/546 (68%), Gaps = 12/546 (2%) Strand=Plus/Plus Query 33111 CTCACCAAAGAACAGCACGATTGGCTGAATTGCTGGCTTGAACTGTGGGGCGCATGGGTT 33170 || || ||| |||||| || ||| | || |||| | | ||||||| ||||||||| Sbjct 11615 CTAACAAAACCACAGCAGGACTGGATTGATAACTGGTTAAATTTGTGGGGGGCATGGGTT 11674 Query 33171 TATTCAGGTCGTCTGGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTA 33230 | || | | || |||||| || | | | || ||||||||| || || Sbjct 11675 CACAGTGGCAGAATCGATAAGCGCCAGATAAACATGATTTATAAGTTCATGATGACTGTT 11734 Query 33231 GAGCCGGG-AAGAGTTATGACAAGGCCAATGTGCAATGATGATGATGGAATGTTGATTTC 33289 ||||| | ||| | | ||| | || ||||||||||||||||||| ||||||||||| Sbjct 11735 GAGCCTCGCAAGGGGCAAGACC-GCCCTGTGTGCAATGATGATGATGGTATGTTGATTTC 11793 Query 33290 TCAGGTCGTCGATTCCGTCATGTACATTGACAAGAAAGCCTTCGGCATCCTCCTCAGCTA 33349 |||||| |||||| |||| |||| ||||||| | ||||||| || || | |||||||| Sbjct 11794 TCAGGTGGTCGATGCCGTTATGTGCATTGACCAAAAAGCCTATGGGATTTTACTCAGCTA 11853 Query 33350 CTACGCTCATGGTTCATCTAAGCGAGCAATTGCATCCTACTATCACGCGACTGCAAAGCC 33409 ||||||||| || |||| |||| ||||| || | || |||||| || ||| || || Sbjct 11854 CTACGCTCACGGCGCATCGAAGCTGTCAATTTCAACTTATTATCACAAGATTGCGAAACC 11913 Query 33410 ACGCAAGATG-TGTGGACGTGGTGGCGAGGGATGGAGAAAACCTTCACTGGCAACCTGTA 33468 |||| ||| || | || ||||| | | | || || ||||| | | || ||| Sbjct 11914 CCGCAGAATGATGACG-CGCTCTGGCGGGCGCTTAAGGAAGCCTTCTCGTGGGACATGTC 11972 Query 33469 GAAACGAAATTGACGACATCCTGAAAGC--GTCGTTATTTGTTTTGTACCAGCCAATGCA 33526 | ||| | || || || ||| ||| || ||| | | || || ||||| |||| Sbjct 11973 GCCGTGAAGTGGATGAAATTCTGGCAGCCAGT-GTT-TACCTATTATATCAGCCTCTGCA 12030 Query 33527 AAATGCTTTCAAAATGCGTAAACGTGTTGAGAAAGTTAAGCATGTTGCTGTTAAAAGCCT 33586 |||||| || || ||||||||||| |||||| | || | |||| | || | | Sbjct 12031 AAATGCATTTAATTCACGTAAACGTGTAGAGAAAATCAAAAAGATTGC-CTAGAACGTGT 12089 Query 33587 TGACATGCAATTATCCATTTAGCCATAATTAGAAGGTAA-GCTGCCGTTAGTGACTCTTA 33645 ||||| ||| | | | | ||| |||||| ||||| | |||||| |||| ||||| Sbjct 12090 TGACA-CTAATGAGCAAATGAGCAATAATT-TTTGGTAAGGTTGCCGTCAGTGTTTCTTA 12147 Query 33646 AGTTGC 33651 || || Sbjct 12148 GGTGGC 12153 >seq2629 Length=15125 Score = 123 bits (136), Expect = 6e-24 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 30073 GTCGATTACCTGACACTAATGACCGCTGAAAAGGCCGATCGCAACGACCTTGCTTACGGC 30132 || ||||| | || || |||| |||| || || || |||||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 30133 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 30190 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 30191 TGACACAGCTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGTGACT 30250 | |||||||| |||||| ||| ||| ||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 30251 CACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 30299 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 >seq2680 Length=520 Score = 104 bits (114), Expect = 5e-18 Identities = 216/322 (67%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 16276 ACCCGGATAAATATGCCCGTATCGATACCGGAGCCATCATTGACCAGCGGCCGGTGAGCG 16335 ||||||||||||| |||| |||||| ||||| | |||||| | |||||| | | Sbjct 453 ACCCGGATAAATACGCCCATATCGACACCGGTATCCGCATTGATGAACGGCCGATTTCGG 394 Query 16336 TGATTCCGCCGGGTAACCAGTCGCCGCCTGCGAACATCGTGATCAGCTCGTTTTCCGTGG 16395 | || || ||||| ||||| ||||| ||| | ||||||||| ||| |||| Sbjct 393 TTATCCCACCGGGAGTACAGTCACCGCCGAAAAACGTGGTGATCAGCAGTAGTTCGGTGG 334 Query 16396 TTCAGCAAAATATCAGCGTCGAAACAATGCGCGTGAGCTGGGACCAGGCGCAGAACGCTA 16455 | || || || | || || ||| ||||||||| || | || | |||| Sbjct 333 TGCATCAGGGAATTGCCATCACCACCTTGCAGGTGAGCTGGTCGGCGGTGGAGCAGGCTA 274 Query 16456 TCGCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCT 16515 | || |||||||| | ||||| || | | || |||||| | || ||||| ||| Sbjct 273 TTGCTTATGAAGCTGAGTGGCGGCGGGATAATGGCAACTGGATAGCCGCCCCGCGAACCG 214 Query 16516 CCACCACGTCATTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16575 |||| || || || || ||| || || ||||| ||||| | || |||||||| | Sbjct 213 CCACACCGGGTTTTGAGGTGCCGAATATCTACGCCGGACGCTATCAGGCTCGGGTGCGGG 154 Query 16576 CAATCAATGCCGCAGAAATTTC 16597 | || || ||||| || ||||| Sbjct 153 CGATTAACGCCGCTGAGATTTC 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117189614245664