Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq2546 143 8e-30 >seq2546 Length=22922 Score = 143 bits (158), Expect = 8e-30 Identities = 275/397 (69%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 23665 GAGTACCTGCTCGACCTCAATGCGACCCAGGCGGCAATCAGGGCCGGGTACAGCAAGAAT 23724 ||||| ||| |||| | || | || || ||||| ||||| || |||||||||| ||| Sbjct 22252 GAGTATCTGGTCGATTTAAACGTTACACAAGCGGCGATCAGAGCTGGGTACAGCACCAAT 22193 Query 23725 CGCGCGTCCGAGATCGGTTACCAACTGCTGCAGAAGCCGGACATCACGTCCGCC-ATCCA 23783 |||||| ||||| || || || | |||||||||| || | | || || || | Sbjct 22192 CGCGCGAGTGAGATTGGCTATCAGTTAATGCAGAAGCCCCACGTTAT-TCAGCGTATTGA 22134 Query 23784 GGAAGCTATGAAGCAGCGCTCCGAGC--GCACCAGGTC--TGACGCCGACTACGTCGTCC 23839 || ||| ||| ||| | | | ||| | || | ||| || |||||| | Sbjct 22133 TGA-GCT--GAAACAG-GAACGTAATAAGCAACTGGGCATTGATGCGAGCTACGTACTGA 22078 Query 23840 GGCGCCTGGAGGAGATCGACCAGATGGACCTCCTGGACATTGTCAATGATGACCTGACCC 23899 |||||| | || ||||||||||||||| | |||||| | | | ||||||| | Sbjct 22077 TGCGCCTCGTTGAAATCGACCAGATGGACGTGGCTGACATTCTGGAACAAGACCTGAGCA 22018 Query 23900 TGCGCCCGCTCAGCCAGTGGCCCAAGGCCTGGCGCCAGTACCTCAGCGGCTTCGACCTGG 23959 | ||| | ||| ||||| | | ||||| | ||| | ||||| ||| | |||| Sbjct 22017 TTAAGCCGTTATCCCAATGGCCGGAATCATGGCGACGGTATTTAAGCGGGTTCAATCTGG 21958 Query 23960 CCGAGATGTTCGAGGGCAAGGGCGACTCCCGCGCGGCGGTCGGCATCCTCAAGAAGATCA 24019 | ||||||||||| ||| |||||| |||| |||||| | ||||||||||||| Sbjct 21957 CGGAGATGTTCGAAGGCCGGGGCGATGAGCGCGATATGGTCGGGGTACTCAAGAAGATCA 21898 Query 24020 AATGGCCGGACAAGGTGAAGAACCTGGAACTGCTCGG 24056 |||||||||||||||| |||||||| ||| |||| || Sbjct 21897 AATGGCCGGACAAGGTTAAGAACCTTGAATTGCTGGG 21861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157105056675296