Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_016763.1 Length=43221 Score E Sequences producing significant alignments: (Bits) Value seq232 2046 0.0 >seq232 Length=5276 Score = 2046 bits (2268), Expect = 0.0 Identities = 1161/1175 (99%), Gaps = 4/1175 (0%) Strand=Plus/Minus Query 31107 AAATCTGAAATAATCCGTGATTCAATCATTTGTATACCGGTAtttttttttGAGACAATT 31166 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1834 AAATCTGAAATAATCCGTGATTCAATCATTTGTATACCGGTATTTTTTTT-GAGACGATT 1776 Query 31167 TTTTCAAACCTACTCTATTTGCCGTAATCTCGCAATATTCATCTAATATTTCAATGCCTA 31226 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1775 TTTTCAAACCTACTCTATTTGCCGTAATCTCGCAATATTCATCTAATATTTCAATACCTA 1716 Query 31227 CAGCGTTCCTTTTCATTGCTTTCGCCACTTTTAATGTGGTTCCAGAACCGGAAAATGGAT 31286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1715 CAGCGTTCCTTTTCATTGCTTTCGCCACTTTTAATGTGGTTCCAGAACCGGAAAATGGAT 1656 Query 31287 CCAGAACGGTGTCGCCTTCTGTGGTGAAAAGTTTGATGAACCATTCAGGTAGGCTTTCAG 31346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1655 CCAGAACGGTGTCGCCTTCTGTGGTGAAAAGTTTGATGAACCATTCAGGTAGGCTTTCAG 1596 Query 31347 GAAAAGCTGCGCTGTGACTGCGGTTTCCACACTCTGTAGCCATGTGTAGCACGTTGGTTG 31406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1595 GAAAAGCTGCGCTGTGACTGCGGTTTCCACACTCTGTAGCCATGTGTAGCACGTTGGTTG 1536 Query 31407 GGTATGCCAAATCCCTGGTGACCCAGTTTTCTAtttttttACCGAAACCACTCCCCACTT 31466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1535 GGTATGCCAAATCCCTGGTGACCCAGTTTTCTATTTTTTTACCGAAACCACTCCCCACTT 1476 Query 31467 TAGATTCATCTCTTTTCTTATCAGTATCACTCATGTTTTTAAGTCGTGAGTTTTTCCAAT 31526 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1475 TCGATTCATCTCTTTTCTTATCAGTATCACTCATGTTTTTAAGTCGTGAGTTTTTCCAAT 1416 Query 31527 CCCCCATAGGCACCATTACTTCCTCTTGGTACATATTGAATTTTTTACTTTTCGTAAAGT 31586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1415 CCCCCATAGGCACCATTACTTCCTCTTGGTACATATTGAATTTTTTACTTTTCGTAAAGT 1356 Query 31587 GGATGCATCTTTCCCAAGAGTCTCTAAAACGATTTGGCCATTTCCCTGGGTAACTAtttt 31646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1355 GGATGCATCTTTCCCAAGAGTCTCTAAAACGATTTGGCCATTTCCCTGGGTAACTA-TTT 1297 Query 31647 tttttATGCCATATGTATTCCTCTGTCCATAACCAGCCTAGTTTTCGCATCATTAGAATT 31706 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1296 TTTTTATGCCATATGTATTCCTCTGTCCATAACCAGCCTAATTTTCGCATCATTAGAATT 1237 Query 31707 AGCTCTATTACATACGTATGGCGCTCGCCATTAATCGCCCTTTCCTTTATGTTTAGAACA 31766 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1236 AGCTCTATTACATACGTATGGCGCTCGCCATTAATCGCCCTTTCCTTTATGTTTAGAACA 1177 Query 31767 AATGAGCCTGATGATTTTGTCACTCTCAGTAGTTCTTTGGCTATCGGGGTGAACCACTCA 31826 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1176 AATGAACCTGATGATTTTGTCACTCTCAGTAGTTCTTTGGCTATCGGGGTGAACCACTCA 1117 Query 31827 ACATATTTGTCTGCACTTACTCCGCCATAGGtttttttCCTTTGGTCTGCGTAAGGTGGT 31886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1116 ACATATTTGTCTGCACTTACTCCGCCATAGGTTTTTTTCCTTTGGTCTGCGTAAGGTGGT 1057 Query 31887 GATGTAACGATCAGATCTATTGAATCGCTTTGAAGCATCTTTAAAGCGATTAAACAATCA 31946 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1056 GATGTAACGATCAGATCTATTGAATCGCTTTGAAGCATCTTTAAAGCGATTAAACAATCA 997 Query 31947 TCATTGATTAGTTCTATCGTCTGttttttttttCTTTAACTTCTTGTTTCATTAGCATTT 32006 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 996 TCATTGATTAGTTCTATCGTCTG--TTTTTTTTCTTTAACTTCTTGTTTCATTAGCATTT 939 Query 32007 CTTTTGTCTCATTCAGTGTTCGTTATCAGGATATTACCTCCTTTTGTTTTGGAGGTCCAG 32066 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 938 CTTTTGTCGCATTCAGTGTTCGTTATCAGGATATTACCTCCTTTTGTTTTGGAGGTCCAG 879 Query 32067 TCTTGCTGATGGTTGTTGACCTAAGTGTAAGATGCGACGTAATATCCTCGTCTGAAACGA 32126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 878 TCTTGCTGATGGTTGTTGACCTAAGTGTAAGATGCGACGTAATATCCTCGTCTGAAACGA 819 Query 32127 AAAAACCGCCTCCCCAGGCGGTTTTTTCGAGGGTTCAGTAAGTTGGGGAACTTCTGAACC 32186 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 818 AAAAACCGCCTGGGGAGGCGGTTTTTTCGAGGGTTCAGTAAGTTGGGGAACTTCTGAACC 759 Query 32187 GTGGTAACAGGGTGTACAAGACCGCTGAAACCAAATTCTGTCCTTTCAGTTTAGCCGTAG 32246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 GTGGTAACAGGGTGTACAAGACCGCTGAAACCAAATTCTGTCCTTTCAGTTTAGCCGTAG 699 Query 32247 TTGGGCTGAGACTTCAAGAACTCTGCATCAGTTAT 32281 ||||||||||||||||||||||||||||||||||| Sbjct 698 TTGGGCTGAGACTTCAAGAACTCTGCATCAGTTAT 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138180900307744