Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq348 199 1e-46 >seq348 Length=55286 Score = 199 bits (220), Expect = 1e-46 Identities = 1249/1959 (64%), Gaps = 93/1959 (5%) Strand=Plus/Minus Query 3704 ACGATCACCATCTACGAGCCGATTGGCTACGACTGGTGGACCGGTGAAGGTGTCACGGCA 3763 || ||| ||||||||| ||| ||| | ||||||||||| |||| || |||| ||| Sbjct 21548 ACCATCGGCATCTACGACGTGATCGGCGAGGACTGGTGGACAGGTGGCGGCTTCACTGCA 21489 Query 3764 AAACGCATTGCTGGCGCTCTGCGCTCCATCGGCAACGATGTCGATGTGACCGTGAACATC 3823 || ||||| | | || || || || | || || | || || ||||| |||| Sbjct 21488 AAGCGCATGTCCGCGGCACTTCGTTCGTTGGGTAAGGGCC-CG--GTTACCGTCGCCATC 21432 Query 3824 AACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGCTGCGCGAGCAC 3883 ||| || ||||||||| | |||||||| |||||||| ||| |||| ||||||||| Sbjct 21431 AACTCTCCGGGCGGCGACATGTTCGAAGGACTGGCCATGTACTCGATGCTTCGCGAGCAC 21372 Query 3884 AAGGGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTCTTTCATCGCC 3943 |||| ||||||||||||| | || || | || |||||||| ||||| |||||||| Sbjct 21371 CCGGGCGAGGTCACGGTGAAGGTGATGGGTATCGCGGCCTCTGCAGCCTCCATCATCGCC 21312 Query 3944 ATGGCGGGGGATGAAATCCGCATCGGCCGCGCCGCCTTCCTGATGATCCATAACGCCTGG 4003 ||||| || || | | | || | || | | ||||||||||||||| ||| |||| Sbjct 21311 ATGGCCGGCGACCACGTGCAGATTGCGCGATCGGGCTTCCTGATGATCCACAACTGCTGG 21252 Query 4004 CTGATCGCCATGGGTAATCGGAATGATCTCCGTGAGATAGCCGATTGGCTGGAGCCATTC 4063 || | ||| || || || | || || || ||||| || || ||||||||||||| Sbjct 21251 CTCCTGGCCGCAGGAAACCGCCACGAGCTGCGCGAGATCGCTGACCAGCTGGAGCCATTC 21192 Query 4064 GACATGACGCTGGCTGACATTTACGCACAGCGCACGGAAATCGACATCGACGACATCGTG 4123 ||| | | |||| ||| | ||||| | |||| ||| | | | ||| | Sbjct 21191 GACCAGGCAATGGCCGACGTGTACGCGGCCAGGACGGGCGAAGACCTTAAGGCCATGCAG 21132 Query 4124 AAACAGATGGACGCCGAGACCTGGATCGGCGGGCGCGAAGCCGTCGACAAAGGGTGGGCA 4183 || | ||||| |||| ||| |||||||| | | ||||| | |||| | ||| Sbjct 21131 AAGCTCATGGATCGCGAGTCCTACATCGGCGGCAGTGCTGCCGTTTCCCAAGGCTTCGCA 21072 Query 4184 GATGCCTTCCTGGAGTCCGACGAGATCTCCA---GCGCTCCCAGCAACCGCAGCGAAGCC 4240 ||| | | || || |||||||||||| || || | |||||| ||| | Sbjct 21071 GATTCGCTGCTCGATTCCGACGAGATCGGCAAGGCCGATGACAGCAA-------GAACGC 21019 Query 4241 ATCCTGGCCAAGCGCCGGATGGATGCCGCCCTGGCTCGCAGC-GGAATGCCGCGAAG-CC 4298 || || |||||| ||||| ||||| || || || | || |||| ||||| || Sbjct 21018 CTC--TGCGGTGCGCCGCATGGAGGCCGCTCT-GCGGGCCTCTGGCATGC--CGAAGTCC 20964 Query 4299 AGCGCAATG-AACTCATCAACGACTTCAAGACCAGCATGCTTGGCGCTGCTGGCGGGGGT 4357 || ||| || |||| | |||||| ||||| | || | |||||| | ||| Sbjct 20963 GAGGCCATGCGGCTGATCAGTCAGTTCAAGTCCAGCGCGGGTGATCCCGCTGGCAGCGGT 20904 Query 4358 GGTGACACCCCGACCG-ATATGCCTGGCGCTGTCGCTCCTGACCTCTC---CGCTGCACT 4413 | | | || |||| | | | | ||| || ||| | | | || | | |||| Sbjct 20903 GAGGGCGAGCCCACCGAACACGGCCAGCG-TGATGCTGCCGGCTTCACGAACACTGCGGC 20845 Query 4414 ACGGGCAGCACAAGACATCACCAAATTCCTCCAAGGAGAATCGCAATGAGCGACTTCGAA 4473 | ||| || || || |||||| |||| ||||||| | ||||| | | |||| Sbjct 20844 GCTGGCCGC-CA--ACCTCACCACCATCCTTTAAGGAGAGCCTCAATGGCCCAGATCGAC 20788 Query 4474 AAACAAATCGGCGAAC-TGAACGCCAGCCTCAAGCAGGTCGGGGACCAAATCAAGTCCCA 4532 | | ||| |||| | ||| ||||||| || |||| || || | ||| || Sbjct 20787 GACGACATC-AAGAACATCAACTCCAGCCTGGAGAAGGTGAACGAGCAGCTGAAGAAGCA 20729 Query 4533 GGCCGAACAGGTAAACACCCAAAT---CGCCAATTTCGGCG-AAATGAACAAGGAAACCC 4588 || || |||| || || | || ||| || ||| | || | | |||||| Sbjct 20728 CGCGGAGCAGGCGAAGGCCGATATCAGCGCGCAT----GCGCAGCTGTCCGAAGAAACCA 20673 Query 4589 GCGCCAAGGTCGACGAACTGCTGACTGCCCAGGGCGAACTGCAAGCACGACTGAGCGCCG 4648 |||||||||||| | |||||| |||||||||| ||||| || ||| || | Sbjct 20672 AGGCCAAGGTCGACCAGCTGCTGGTCACCCAGGGCGAGCTGCAGGCCAACCTGCAGGCTG 20613 Query 4649 CGGAACAAGCCATGCTGGCCAAC--GAGAAGCGTGACGGCGGCGAGG--AAGCACCGAAG 4704 | | || | ||| || | | | ||| || ||| ||||| | || ||| || | Sbjct 20612 CCCAGCAGGTCAT--TGCCAAGCTGGAGCAGGGTGGCGGCGCCCCGGCCAAGGCCC--TG 20557 Query 4705 ACCGCCGGCCAAATGGTCGCAGAG-----AGCCTGAAAGAGCAGGGTGTAACCAGCTCCC 4759 ||| |||| || |||| || | | ||||| |||| | | |||| | Sbjct 20556 ACCATCGGCGAAGTGGTTGCCGCGTCCGATGCCTGCAAGAAC----TTCAACCCG-GGTA 20502 Query 4760 TGCGCGGCTCGCATCGCGTATCCATGCCGCGCTCGGCCATCACCTCCATCGACGGCTCTG 4819 ||| ||| || || || || | | |||| |||||| | |||| ||| | Sbjct 20501 TGCAGGGC-AGCTTCACG-GTCAAGG-------CGGCTATCACCCGCGAAGACGCCTCGG 20451 Query 4820 GCGGCGCCCTGGTGGCTCCTGATCGTCGCCCCGGTGTCGTTGCCGCTCCGCAGCGTCGAC 4879 |||| ||||| | || | || |||||||| ||||| | ||| | | || | Sbjct 20450 CCGGCACCCTGATCCAGCCGCAGCGCGTGCCCGGTGTGGTTGCAACGCCGAACCAGCGTC 20391 Query 4880 TGACCATCCGCGACCTGGTTGCGCCTGGCACCACTGAGTCGAACTCCGTCGAGTACGTCC 4939 | ||||||||| || | | || |||| ||| || | ||||||| |||| Sbjct 20390 TTTTCATCCGCGATCTTCTGACTTGGGGGCCCACCTCCTCGGACAGCATCGAGTATGTCC 20331 Query 4940 GCGAGACCGGCTTCGTCAACAATGCCGCTCCTGTT--TCG-GAAGGC-ACC---CAGAAG 4992 |||||||||||||| |||||| | || | || | || ||| | ||| | |||| Sbjct 20330 GCGAGACCGGCTTCACCAACAACG-CGGACGTGGTGGCCGAGAACCCGACCAATCCGAAG 20272 Query 4993 CCATACTCCGACCTGACCTTCGAACTGGAAAACGCGCCGGTTCGCACCATCGCACACCTG 5052 || | ||||| ||| | ||||| ||||| || || ||||||||| ||| | Sbjct 20271 CCGGAGTCCGATCTGGCGTTCGAGCTGGACTCGGCCAAAATTGCCACCATCGCCCACTGG 20212 Query 5053 TTCAAGGCAAGTC--GCCAGATCCTGGACGACGCTTCGGCCT--TGCAGAGCTACATCGA 5108 || || ||| ||| | ||| ||| || | || | ||||| ||||||| | Sbjct 20211 ATC--CGCGCGTCCAAGCAGGTTCTGCGCGATGC--CAGCATGCTGCAGGCCTACATCAA 20156 Query 5109 TGCGCGCGCTCGT-TACGGCCTGATGCTGGTCGAAGAAGGTCAACTGCTCTACGGGAACG 5167 | || || | |||||||||| |||| ||||||| || ||||| | ||| || Sbjct 20155 CG-GCCGTCTGATGTACGGCCTGAAGCTGAAAGAAGAAGCGCAGCTGCT-GAAGGGTTCG 20098 Query 5168 GG-ACCGGCGCCAATCTGCACGGCATCATTCCGCAGGCACAGGCCTACGCGCCGCCGAGT 5226 || ||| || | | ||| || | ||||| | |||| ||| ||| Sbjct 20097 GGCGTAGGCCTGAACATCAATGGCCTCTACACCCAGGCCACGACCTATGCGAACCCG--- 20041 Query 5227 GGCGTAGTGGTAACCGCCGAGCAGCGAATCGACCGCATCCGCCTGGCGATCCTTCAGGCG 5286 ||||| || |||| | ||||| || | ||| | || || || |||| | Sbjct 20040 GGCGTGACCGTGCAGAACGAGACGGCCATCGATCGTCTGCGCATTGCCATGCTGCAGGTG 19981 Query 5287 CAACTGGCCGAGTTCCCGGCCAGCGGTATCGTGCTCAACCCCATCGACTGGGCGCTGATC 5346 |||||||||| | ||| || |||||||| ||||||||||||||| | ||| Sbjct 19980 ACCCTGGCCGAGTACGAAGCCGATGGCATCGTGCTGAACCCCATCGACTGGACCACCATC 19921 Query 5347 GAGCTGACCAAGGACGCCGAGAACCGTTACATCATCGGCAGCCCGC-AGAACGGCACCAC 5405 || ||| | ||| | |||||||| ||| | ||| || |||| | | | | Sbjct 19920 GAACTGTCGAAGACCACCGAGAACGCCTACCTGTTCGCCACGCCGCGTGGCCTGGCTGTC 19861 Query 5406 TCCGACCCTCTGGCGTCTGCCGGTGGTGGAAACCCAGGCCATCACTCAGGACGAGTTCCT 5465 ||| || ||| | ||||| |||| |||| ||||||| || || ||| ||||| Sbjct 19860 CCCG-GTCTGTGGGCGCGCCCGGTCGTGGCAACCAAGGCCATGGATCTGGGCGACTTCCT 19802 Query 5466 GACCGGTGCGTTCTCTCTCGGCGCCCAGATCTTCGACCGCATGGACATCGAGGTTC-TGG 5524 ||||||||| ||| | || || ||| || |||||| | | ||| || || Sbjct 19801 GACCGGTGCCTTCAAGATGGGTGCTCAGGGCTGGGACCGCGAGCA-GGCGAACATCACGG 19743 Query 5525 TTTCCACCGAGAACGACAAGGACTTCGAGAACAACATGGTCACCATCCGCGCTGAGGAGC 5584 | |||| | || || | | |||||| || |||||||||||||||| | |||||| Sbjct 19742 TCTCCAACCAGGACCGCGACAACTTCGTCAAGAACATGGTCACCATCCTCTGCGAGGAGG 19683 Query 5585 GGCTGGCCTTCGCGGTCTATCGCCCCGAGGCTTTCGTGA 5623 ||| | | | |||| ||||||||||| || |||| Sbjct 19682 ACGTGGGCCTGACCGTCTTCCGCCCCGAGGCCTTTGTGA 19644 Score = 172 bits (190), Expect = 2e-38 Identities = 319/463 (69%), Gaps = 9/463 (2%) Strand=Plus/Minus Query 10675 AGAAGCT-GGCGCCTTCACTGGGGCTCCTATCGAGAAAGAGATCACCTGGAAACAGGGCG 10733 ||||| | ||||| ||||| || || | || || || ||| ||||| ||||||| Sbjct 16543 AGAAGGTCGGCGCGTTCACCGGCCGCCCGGTGGAAAAGGAAATCCGTTGGAAGCAGGGCG 16484 Query 10734 ATAAGGAACTGACTGCAACCGTGTACGTCCGGCC-CTTGTCGTACAGCACAGCTGTTTCT 10792 | |||| ||||| || |||||||| || ||||| || | | ||| | || || || Sbjct 16483 ACGAGGAGCTGACCGCCACCGTGTATGTGCGGCCGCTGGGATTCCAGG-CGGCGGTGTCG 16425 Query 10793 GACCTTCTG---GCCATGAATGGCAAGGTGGATGGCGTAGCGGGTCGGATAGCCGCGTCA 10849 ||| | ||| |||| ||| |||| || ||||| || || || || || || Sbjct 16424 GACGTGCTGTCGGCCACGAA---CAAGCACGACGGCGTGGCCGGCCGCATCGCGGCCAGC 16368 Query 10850 ATCGTGGATGAAGAGGGTAAGCCGGTATTCACGCCGGCAGATATCACCGGCGAGGCCGAT 10909 ||| || | || || ||| |||| ||||| || || ||||| |||||||||||| Sbjct 16367 ATCTGCGACCAGGACGGCAAGGCGGTGTTCACCGTTGCTGACATCACAGGCGAGGCCGAT 16308 Query 10910 CCCGGTCGCGGCGCGCTGGATGGAAACCTGACCATCGCCCTGCTCACCGTGATCGCCGAG 10969 || | |||||||| |||| || ||| || | | || ||||| | | |||| |||| Sbjct 16307 CCGGAGCGCGGCGCATTGGACGGCAACTTGTCGGTGGCGCTGCTGATGGCAATCGGCGAG 16248 Query 10970 GTGAACAACCTGGGAAAGACGACCAGCTCAGCGAACTAGATGAGGTGTGGCATGAGCTGG 11029 ||||||||||||||||| | || |||| | | |||||| ||||| ||||||| Sbjct 16247 GTGAACAACCTGGGAAAAGCTACGAGCTGACCCCGGAGGATGAGCTGTGGTGCGAGCTGG 16188 Query 11030 TGATGTGCGGGATTGGCGGCAGAACCATCGCAGAAGCCAAGTCGCGTCTCACCTACCGGG 11089 | | |||||| |||||| | | ||||| || || ||| || ||| || ||||| Sbjct 16187 TCCTCAACGGGATCGGCGGCCGCAGCATCGGTGAGGCGAAGGAACGCCTCTCCATCCGGG 16128 Query 11090 AGTTCCTGAGCTGGTGCAAGTTCCGGAGCAAGCGCGGGAGTCT 11132 |||||| | |||| || || ||| ||||||||| || || Sbjct 16127 AGTTCCAGCTCTGGAGCGTGTACCGAGCCAAGCGCGGCAGCCT 16085 Score = 100 bits (110), Expect = 1e-16 Identities = 238/352 (68%), Gaps = 6/352 (2%) Strand=Plus/Minus Query 3062 ACCATCGGCATCAATCCGGTCGATGCTCAGTTGCTGGAGACGCGAGAGCATGGCGTGATC 3121 || ||||||||||| |||| |||||| ||| |||| ||| |||| | | | ||| Sbjct 22199 ACGATCGGCATCAACCCGGCCGATGCCCAGCTGCTTGAGTCGCGCGCGTTTTCGGTGGAG 22140 Query 3122 GAGATTTGCAGATGGTTCGGGGTGCCGCCCTGGATGATCGGCCAGACCGACAAGGGGAGC 3181 ||||| ||| | |||||| | || || || | ||| | ||||| |||| ||| || | Sbjct 22139 GAGATCTGCCGGTGGTTCCGTGTTCCTCCGTTCATGGTTGGCCATGCCGAGAAGTCGACC 22080 Query 3182 AACTGGGGGACAGGGCTTGAACAGCAGATGCTCGCGTTCCTGACATTCTCGATCAGCTCG 3241 | |||||| || ||| | || ||||||||| ||| |||||||| || | || || | Sbjct 22079 AGCTGGGGCACGGGGATCGAGCAGCAGATGATCGGCTTCCTGACTTTTACCCTCGGC-CC 22021 Query 3242 ATCACCA-ATCAGATTCAGCAGTGCG-TCAACAAGCGGCTGCTAACTGCGCCCGAGCGGA 3299 | | | || ||| | ||| ||| ||| ||| || || | || | ||||| | Sbjct 22020 CTGGCTACGTCGAATTGAACAG-GCGATCAGTAAGGATCTTCTGTCGCCGGCTGAGCGCA 21962 Query 3300 TTCGCTATTACGCCGAGTTCTCACTTGAGGGGTTCCTGAAGGCTGATAGCGCTGGTCGCG 3359 || ||| | ||||| | | || ||| | || || || ||||| ||||||| Sbjct 21961 CCAAGTACTACCCGAAGTTCGCGGTAGAAGGGCTTCTTCGCGCCGACAGCGCGGGTCGCG 21902 Query 3360 CTGCCTGGTACAGCA-CTATGGCGCAAAACGGTTTCATGACCCGCAACGAAG 3410 | |||| ||| ||| | |||| | ||||| || |||||||| |||||| Sbjct 21901 CGGCCTTCTAC-GCAGCCATGGTCAACAACGGCATCCTGACCCGCGACGAAG 21851 Score = 91.5 bits (100), Expect = 5e-14 Identities = 94/121 (78%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 36854 TCCATGTAAGCGGCTATGAACTGCGTCGCCGCTTCAGCATTGATGGCGTTTCCGTAGGCG 36913 |||||||| ||| | || | | | ||| |||| | |||||| || ||||||||| Sbjct 41833 TCCATGTAGGCGCCGATCACTTCGGCCGCGACTTCCGGGACGATGGCATTGCCGTAGGCG 41774 Query 36914 CGCAGGCGTCCCACTCGGGAGGGAGCCCCATGAGCCAGCGG--GAATGTGCCGGGTTCAA 36971 ||||||||||||||||||| ||| |||||||||||||| | ||| ||| |||||||| Sbjct 41773 CGCAGGCGTCCCACTCGGGCAGGAACCCCATGAGCCAGCAGACGAA--TGCTGGGTTCAA 41716 Query 36972 C 36972 | Sbjct 41715 C 41715 Score = 80.6 bits (88), Expect = 9e-11 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 13529 GGCATGGCTCACGATGGGATTGATGCTGTTCCGGAGACCGGCACCTGGTTACTCCAGAAG 13588 |||||||| ||||| || || || |||||| ||||| || || ||| | || |||||| Sbjct 13675 GGCATGGCCCACGACGGTATCGACAGTGTTCCCGAGACAGGAACTTGGCTGCTGCAGAAG 13616 Query 13589 GGCGAGAGGGTGACGACGGCAGAGACGAGCGCAAAGCTCGAC 13630 ||||||||||| || || || | || ||||| ||||| ||| Sbjct 13615 GGCGAGAGGGTCACCACTGCGGCCACCAGCGCCAAGCTGGAC 13574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172749324595648