Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq1458 147 7e-31 seq2599 138 4e-28 seq2629 96.9 1e-15 >seq1458 Length=11418 Score = 147 bits (162), Expect = 7e-31 Identities = 233/333 (70%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 25944 GCCGATCATCTGCATGGTTCCGCCAAC---GTTGACCACAATTTCAGTGGTGTAGCGCTC 26000 ||| | ||| ||||| || ||||||| |||||| || | |||||| ||||| || || Sbjct 11199 GCCTAACATTTGCATTGTACCGCCAATCGGGTTGACAACGACTTCAGTCGTGTAACGATC 11140 Query 26001 AACGCCGTCCTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGA 26057 || || ||| || || ||||| | || || || || || ||||| || Sbjct 11139 CTGACCACTCTGATCCTGCCATTTACGGGTCTGCAAAGCACCTTCGATATAGACCTGAGA 11080 Query 26058 ACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATG 26117 ||||| ||||||||| || |||| || || | || || |||| || || || || Sbjct 11079 GCCTTTACGCAGGTACTCACCAGCGACTTCTGCCAGTTTACCGAACATGACCACTCGGTG 11020 Query 26118 CCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGC 26177 |||||| || ||| || | || ||||| |||||||| |||||| || || || || Sbjct 11019 CCATTCGGTTTTCTCTCTCATCTCACCGGTTTGCTTATCACGCCAGCTCTCGGACGTGGC 10960 Query 26178 TACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCC 26237 | ||||||||||| ||||| || ||||| ||||| || || | || ||||| | ||| Sbjct 10959 CAGAGTAATGTTGGCAACTGCTCCACCATTCGGCATATAGCGAACTTCCGGATCCTGCCC 10900 Query 26238 CAGGTTACCGACAAGGATTACTTTATTTACGCC 26270 || ||||| || | || ||||| |||||||| Sbjct 10899 CAAATTACCCACTAAAATAACTTTGTTTACGCC 10867 >seq2599 Length=15424 Score = 138 bits (152), Expect = 4e-28 Identities = 241/348 (69%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 25942 TTGCCGATCATCTGCATGGTTCCGCCAACG---TTGACCACAATTTCAGTGGTGTAGCGC 25998 ||||| | ||||||||| || ||||| | | || ||||||| || || || || || Sbjct 12 TTGCCCAGCATCTGCATTGTCCCGCCGATGGGGTTAACCACAACCTCCGTTGTATAACGA 71 Query 25999 TCAA--CGCCGTCCTT-TTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGT 26055 || | | || | || ||||||||| |||| || ||| |||||||| |||| ||| Sbjct 72 TCTTGTCTCTGTTGGTCTTGCCACTTGCGTGTTTGCAATTGACCCTCAATATAAATCTGG 131 Query 26056 GAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGA 26115 |||||| |||| || || || || | || || | || || ||||| || || || Sbjct 132 CTGCCTTTCCTCAGATATTCACCGGCAACTTCTGCCAGTTTTCCGAACAGAACCACACGG 191 Query 26116 TGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTC 26175 ||||||||||| ||| || || || | ||||| || ||||| ||| ||||| Sbjct 192 TGCCATTCTGTTTTTTCCCTCAGCTCACCTGATTGCTTGTCTTTCCATGCTTCAGAGGTA 251 Query 26176 GCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTC 26235 || | || || |||| ||||||||| ||||| || |||||| | || || || | Sbjct 252 GCCAGTGTGATATTGGTGACTGCGCCACCATTGGGTGAGTAACGTACTTCCGGGTCTTGA 311 Query 26236 CCCAGGTTACCGACAAGGATTACTTTATTTACGCCGCGTGATGCCATT 26283 || | || |||||| || || | | || ||||||||| ||||||| Sbjct 312 CCTAAGTGACCGACCAGAATACATCTGTTAACGCCGCGTTGTGCCATT 359 >seq2629 Length=15125 Score = 96.9 bits (106), Expect = 1e-15 Identities = 216/324 (67%), Gaps = 3/324 (1%) Strand=Plus/Minus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTC---AACGCC 26006 ||| ||||| | ||||| | || || || | ||| || ||||| || || | ||| Sbjct 12586 CATTTGCATTGACCCGCCGATATTTACTACCACTTCCGTTGTGTATCGGTCTTGACCGCT 12527 Query 26007 GTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTT 26066 | | || ||| || || |||| ||| || || ||||| ||||| ||||| || Sbjct 12526 TTGGTCTTGCCATTTACGCGTTTGCAGAGAGCCTTCGATGTATACCTGGCTTCCTTTTTT 12467 Query 26067 CAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGT 26126 ||| || ||||| || | || |||| |||||| || | || || ||||||||||| || Sbjct 12466 CAGATATTCGCCTGCAACTTCAGCTAACTTGCCGAAAATTACCACTCGATGCCATTCGGT 12407 Query 26127 CACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAAT 26186 || | |||| || | || || || ||| ||| || || |||| || | Sbjct 12406 TTTCTCGCGCATTTCACCCGATTGTTTGTCACGCCACGATTCCGATGTGGCTAGTGTGAG 12347 Query 26187 GTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACC 26246 || || ||||| || || |||||||| || || || || || | || | || ||| Sbjct 12346 ATTTGCTACTGCTCCCCCTGCTGGCATGTATCGAATTTCAGGGTCTTGGCCTAAGTGACC 12287 Query 26247 GACAAGGATTACTTTATTTACGCC 26270 | |||||||| || |||||||| Sbjct 12286 TATGAGGATTACCTTGTTTACGCC 12263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159812164603424