Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq2774 82.4 2e-11 >seq2774 Length=20939 Score = 82.4 bits (90), Expect = 2e-11 Identities = 280/424 (66%), Gaps = 28/424 (7%) Strand=Plus/Minus Query 19528 AATGGACGCACAACTACTGCTTTCCGTAGTCAAGATGGTTTAGTTCCAGACGTAACAAAT 19587 || || ||||||| ||| ||||| | ||||| || ||||| ||| || || || Sbjct 6917 AACGGCCGCACAAACTTTGCATTCCGCAAGCAAGAAGGCTTAGTGCCATCGGTGACCGAT 6858 Query 19588 --GAAGCTGATGCAGAAACATTGGTTAAAAATGGCT----ATTCA--TTCTATGGTGCTT 19639 || |||| ||||| | || || ||||| ||||| ||||| ||||| | Sbjct 6857 AAGACGCTG--GCAGATAGTTT------AATTGGCTTAGGATTCAACTTCTACGGTGCAT 6806 Query 19640 GGGCAACCGCTAATGACCGATTCCAGTTTGCTGGCAATGGCTCTGTAACTGGTCAGTACA 19699 | || || || ||||||||| |||||| | | |||||| | ||||| | |||| Sbjct 6805 ACGGTACAGCAAACGACCGATTCATTTTTGCTAACCAAGGCTCTATTTCTGGTAAATACA 6746 Query 19700 AATGGATTGATAACTTTGACTTCCAAGTGTTCTTGCGTACTCAGTTGCAGCTTGCGTATA 19759 ||||| |||| | || | |||||| | ||| | |||||||| | |||| | Sbjct 6745 AATGGGTTGACAGCTACGTTAACCAAGTCTACTTAAACAGCCAGTTGCAATTAGCGTTGA 6686 Query 19760 TGAATATGTTC-CAAGCTCAAAAGACAATCCCATACAATGATCAAGGTATTGC----TAC 19814 ||| ||||| | |||| ||| ||| |||||||||| || ||||| | || || Sbjct 6685 TGACGATGTTAACGAGCTTTAAAAACA-TCCCATACAACGAGCAAGGCAAGGCAATTCAC 6627 Query 19815 CGTTCGCGCATACTCACAAGATCCAATCGATCAAGGTATCAACTTTGGTGGTATTC-GCG 19873 || ||| || || | ||||| |||||| | || | |||| ||| | |||| ||| Sbjct 6626 CGATCG-GC-TATT--CAAGACCCAATCAACCAGATGCTTAACTATGGCGCAATTCAGCG 6571 Query 19874 CTGGAGTAAACTTATCTAATGCTCAAAAATTCCAAGTGAACCAAGAAGCTGGTTTTGATG 19933 | || || | ||||| | || ||| ||| | ||| ||| |||||||| |||| Sbjct 6570 C-GGTGTGACGCTATCTGAGCAACAGAAAAAGCAAATCAACTTAGAGGCTGGTTTCGATG 6512 Query 19934 CTGC 19937 | || Sbjct 6511 CGGC 6508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148311755745632