Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq2599 190 5e-44 seq2774 114 3e-21 >seq2599 Length=15424 Score = 190 bits (210), Expect = 5e-44 Identities = 368/533 (69%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 19643 CAGCATGACTGGCTTAATGGGTGGCTTGAGCTATGGGGGGCATGGGTTTATTCGGGTCGT 19702 ||||| |||||| || || ||| | | | ||||||||||||||| | || | Sbjct 11627 CAGCAGGACTGGATTGATAACTGGTTAAATTTGTGGGGGGCATGGGTTCACAGTGGCAGA 11686 Query 19703 CTGGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTAGAGCCGGG-AAG 19761 | || |||||| || | | | || ||||||||| || || ||||| | ||| Sbjct 11687 ATCGATAAGCGCCAGATAAACATGATTTATAAGTTCATGATGACTGTTGAGCCTCGCAAG 11746 Query 19762 AGTTATGACAAGACCAATGTGCAATGATGATGATGGAATGTTGATTTCTCAGGTCGTCGA 19821 | | ||| | || ||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 11747 GGGCAAGACC-GCCCTGTGTGCAATGATGATGATGGTATGTTGATTTCTCAGGTGGTCGA 11805 Query 19822 TTCCGTCATGTACATTGACAAGAAAGCCTTTGGCATCCTCCTCAGCTACTACGCTCATGG 19881 | |||| |||| ||||||| | ||||||| ||| || | ||||||||||||||||| || Sbjct 11806 TGCCGTTATGTGCATTGACCAAAAAGCCTATGGGATTTTACTCAGCTACTACGCTCACGG 11865 Query 19882 TTCATCCAAGCGAGCAATTGCATCCTACTATCACGCGACTGCAAAGCCACGCAAGATG-T 19940 |||| |||| ||||| || | || |||||| || ||| || || |||| ||| | Sbjct 11866 CGCATCGAAGCTGTCAATTTCAACTTATTATCACAAGATTGCGAAACCCCGCAGAATGAT 11925 Query 19941 GTGGACGGGGTGGCGATGGATGGAGAAAACCTTCACTGGCAACCTGTAGAAATGAAATTG 20000 | | || ||||| | | || || ||||| | | || ||| | |||| | | Sbjct 11926 GACG-CGCTCTGGCGGGCGCTTAAGGAAGCCTTCTCGTGGGACATGTCGCCGTGAAGTGG 11984 Query 20001 ACGACATCCTGAAAGCGTCATTATTT--GTTTTATACCAGCCAATGCAAAATGCTTTCAA 20058 | || || ||| ||| || | ||| | ||||| ||||| |||||||||| || || Sbjct 11985 ATGAAATTCTGGCAGC--CAGTGTTTACCTATTATATCAGCCTCTGCAAAATGCATTTAA 12042 Query 20059 AATGCGTAAACGTGTTGAGAAAGTTAAGCATGTTGCTGTTAAAAGTCTTGACATGCAATT 20118 ||||||||||| |||||| | || | |||| | || || |||||| ||| Sbjct 12043 TTCACGTAAACGTGTAGAGAAAATCAAAAAGATTGC-CTAGAACGTGTTGACA-CTAATG 12100 Query 20119 ATCCATTTAGCCATAATTAGAGGGTAAGCTGCCGTTAGTGACTCTTAAGTTGC 20171 | | | | ||| |||||| || | | |||||| |||| ||||| || || Sbjct 12101 AGCAAATGAGCAATAATTTTTGGTAAGGTTGCCGTCAGTGTTTCTTAGGTGGC 12153 Score = 82.4 bits (90), Expect = 2e-11 Identities = 214/324 (66%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 18292 ATGAAAACATACCGAATAAAATTGCCGTGGCCTCCTTCAAACAACCGATATTGGCGACAC 18351 ||||| || ||||| ||||| |||||||||| || ||| || | |||||| |||| Sbjct 11039 ATGAAGACTTACCGCTTAAAACTGCCGTGGCCGCCGACAATTAATCATTATTGGAAACAC 11098 Query 18352 TCAAGAGGGATCCACTACATCAGCGATTGGGGAAAGCGATACCGGCGAGAAG-TAATCGA 18410 ||||| || |||||||||| || ||| || ||||| | |||| | ||| Sbjct 11099 TCAAGGTGGGGTCACTACATCACAGAGAAGGGCAAAGATTACCGAC-AGAACATCATCAC 11157 Query 18411 AATAATTCAGCAACAACAGCTAGACCTTAAAATCACACCCCGCATCAGAATCACCATTCT 18470 | | || |||| || | ||||| | | | | ||||||||||||| || || Sbjct 11158 ACTCATCAAGCAGCAGGACTTAGACATCCTCACCCCCTCCCGCATCAGAATAACAATCAC 11217 Query 18471 CGCAGCACCTCCCGATAACCGCAAACGCGACCTGGACAATCTACCAAAGGCCGTTTTTGA 18530 ||| ||||| || ||| | | || | || || || || || || || || || Sbjct 11218 TGCACACCCTCCAGACCGACGCCGAAGAGATATCGATAACCTGCCCAAAGCGGTCTTCGA 11277 Query 18531 CGCACTCACTAGTGCGGGCTTCTGGCTGGATGACGGCCAGATAGACGATATGCGCATCAA 18590 | |||| || ||| |||||| | ||||| | ||||| || |||||||| |||| Sbjct 11278 CTCACTGACACATGCCCATTTCTGGGTTGATGATGAGCAGATTGATGATATGCGGATCAC 11337 Query 18591 GCGCTGTCAGGCGGTTAAAGGCGG 18614 ||| | | | |||||||||| Sbjct 11338 GCGGGGCGAATTGATTAAAGGCGG 11361 >seq2774 Length=20939 Score = 114 bits (126), Expect = 3e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 20191 GGGTCAGTCGTATAAAGGTCATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGAGTC 20250 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 20146 GGGTTAGTCGTATAAAGGTTATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGATTC 20087 Query 20251 CACGCTGTCCAGCCAA 20266 |||||| ||| ||||| Sbjct 20086 CACGCTATCCCGCCAA 20071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128283636925120