Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq2629 167 6e-37 >seq2629 Length=15125 Score = 167 bits (184), Expect = 6e-37 Identities = 464/702 (66%), Gaps = 16/702 (2%) Strand=Plus/Minus Query 29060 GCGTCAACAACTACGCCAATGATTTTGCAGTTTCCGTTGATTTCTATCATCGGATATTGT 29119 || || || || ||||| || ||||| ||||| || || || |||||| | || || Sbjct 7417 GCATCTACTACAACGCCTATTATTTTACAGTTCCCATTAATGGGTATCATGCGGTACTGA 7358 Query 29120 GGGTTTAATGGTTTTAAAAACTTTCGGCCTGCATCCATAACTAATTTTTTGAATGTGGCC 29179 || || | ||||||| | | ||| || ||||| | | ||| ||| |||||||| Sbjct 7357 GGATTCAGAGGTTTTAGATATTTTGAACCAGCATCTGTTATGTATTGTTTAAATGTGGCT 7298 Query 29180 TCGTTTTCACCTTCTAATTTTGCAACAACCAGCTTGCCGTTTCTTGGTTCGACTTCGGGA 29239 || || || || ||| || ||||| | ||| || || ||| || | | || Sbjct 7297 TCATTATC------TAGTTTGGCCACAACTAACTTACCATTAACTGGCTCTATATTTGGG 7244 Query 29240 TCAACCAGAATTATCATTCCTTCTGGAATGCTTAACCCTGCCGGTGCTGTCATAGAGTCA 29299 ||||| | || | ||| ||||||||||| || | |||| || | |||||||| ||| Sbjct 7243 TCAACTAATATAACCATCCCTTCTGGAATACTAAGTCCTGAAGGAGACGTCATAGAATCA 7184 Query 29300 CCTTGGACATCAAGCCAAAATGAATCTTCTGAACAATCTACAGTGGTGTCGTGCCAGTTC 29359 || ||||| | |||||| ||||| | ||||| || || || |||| ||||| Sbjct 7183 CCGATCACATCCAACCAAAAAGAATCACCAGAACAGCTGACGGTAGTTTCGTACCAGTCA 7124 Query 29360 TCTATCGCGCGCTTGTGATAAGGTTCTACAGCTTCCATCCATTGCCCTGCGCTTACCCAA 29419 ||||| | | ||||| || || || || ||||| |||| | || ||||| ||||| Sbjct 7123 TCTATAGATAGTTTGTGGTATGGCTCCACGGCTTCGCTCCAATTACCAGCGCTAACCCAG 7064 Query 29420 CTGATAAGAGGGTATGATCCTCTTGGCTCATGCCTACTATGATAGGCAACGTT-TGTCTG 29478 || ||||||||||| ||||||| | ||| || | | | ||| || | | Sbjct 7063 CTTATAAGAGGGTACTCACCTCTTGAGTGATGAAATTTAGAAAATGAAACATTATCACCA 7004 Query 29479 GCTTAA--ATCTCCTTTCAGCAAATAGTCAGGGGAGCACTGAAGAGCCTTCGAAAGTGCC 29536 | | | || ||| ||| | || ||||| | ||| ||||| | | | ||| Sbjct 7003 CCGTCACTATTACCTGTCATAAGGTATTCAGGTGCACACCCAAGAGAACTTGCTAATGCT 6944 Query 29537 AACAGGTTCTCCCCATTTGGCTCAGTCTCAGAGCGC--TCCCATTGCGATATTGCAACAT 29594 | | ||| | |||| ||| | | | | | ||| |||||||| || || | | | Sbjct 6943 ATTAAGTTTCCTCCATCTGG-TGA-TGTTATCCCGCCTTCCCATTGAGAGATGGATGCGT 6886 Query 29595 TAGACACTCCCACCATCTTACCAAGAGCGGCTTGTCTAATCTTGAGtttttttCTTCGAG 29654 || || || || ||||| | || || || ||| | | ||| || | ||||||||| Sbjct 6885 GTGATACGCCGACTTTCTTAGCCAGCGCAGCCTGTGTGAGCTTAAGCTCTTTTCTTCGCA 6826 Query 29655 CGCGAATACGCTCACCCATCAATTGTGT-ATTCATAGTTAAGTCATCTTAAATAAACTTG 29713 ||| || || || || | |||| | |||||||||||||| ||||||||| |||| Sbjct 6825 ATTTAATGCGGTCGCCGAT-ATTTGTTTCATTCATAGTTAAGTAATCTTAAATCTTCTTG 6767 Query 29714 ACTAAAGATTCCT-TTAGTAGATAATTTAAGTGTTCTTTAAT 29754 ||| |||| |||| | || |||||||||| |||| ||| Sbjct 6766 ACTTAAGAGTCCTAAAAATACATAATTTAAGATGTCTTAAAT 6725 Score = 134 bits (148), Expect = 4e-27 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 35049 GATAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 35108 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 35109 CAACAAGCCGTAAACACCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 35168 ||||||||||| ||| | | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 35169 GGAACGCTCACGTCTGCTCAGTGGGATGCCGG 35200 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 98.7 bits (108), Expect = 3e-16 Identities = 158/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 30673 TTATGGCTGTGTGGCGCAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATG 30732 |||||||||| ||| | || |||||||| | ||| ||||| | ||||||||| | |||| Sbjct 5763 TTATGGCTGTATGGAGAAAAACATACGGCTTTAATAAAAAGGTTGATTGGATCAGCAATG 5704 Query 30733 AACAGTTCGCTGAAC-TCACTGGCATGGCACCA-ACCAAATGTTCTACCGCCAAAAACGA 30790 ||||||| | || | | | ||| ||| || || | || || || || |||||| Sbjct 5703 AACAGTTAG-AGAGCATGATACGCA-AGCATCACACACACTGCTCAACAGCTAAAAACCT 5646 Query 30791 GCTTATCAGAATGGGGGTTCTCACTCAGGTGGGGCGTCAGGTTGGTATGAATAAAAATAT 30850 | | |||| | ||| |||| |||| || || ||||||| || |||| ||| | Sbjct 5645 GTTAATCAATAAAAAGGTACTCATTCAGCAAGGTCGAAAGGTTGGGATAAATACTAATCT 5586 Query 30851 TTCCGAGTGGAAGACGAAGGTTAACGGATTCGGTAAAACATT 30892 ||| |||||| | || || |||||||||| | |||||||| Sbjct 5585 TTCTGAGTGGGAAACTAAAAATAACGGATTCTGCAAAACATT 5544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127179674472160