Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq2270 251 2e-62 seq2814 120 8e-23 seq2546 87.8 5e-13 >seq2270 Length=26257 Score = 251 bits (278), Expect = 2e-62 Identities = 335/461 (73%), Gaps = 12/461 (3%) Strand=Plus/Minus Query 17010 ATGGCACTCACCGACAAACAAGAAATGTTCTGTCGCGAGTACCTCATCGACTTAAACGCC 17069 ||||||||||||||||||||||| ||||| ||||||||||||||| | || || |||||| Sbjct 24121 ATGGCACTCACCGACAAACAAGAGATGTTTTGTCGCGAGTACCTCGTTGATTTGAACGCC 24062 Query 17070 ACACAGGCGGCGATTCGGGCGGGGTACAGCGTCAAAACGGCTAACCGCACCGCCTCCGAA 17129 ||||| ||||| ||||| ||||||||||||| || || || |||||||| || || || Sbjct 24061 ACACAAGCGGCCATTCGTGCGGGGTACAGCGAGAAGACTGCAAACCGCACTGCGTCTGAG 24002 Query 17130 AACCTGTCAAAACCTGACATCCAAAACAGAATCGCTGAACTCAAGAATAAGCGCAACGAG 17189 ||| ||||||||||||| || ||| | || ||||||||||| | | ||||| || Sbjct 24001 AACTTGTCAAAACCTGATATTCAATCACGCATTGCTGAACTCAAAGCTGAACGCAATGAA 23942 Query 17190 GACGTGGGTATAAATGCTGCTTATGTGCTCCAGCGCTTAGTTGAGATTGACCAGATGGAC 17249 || ||||| || ||||| || ||||| | |||| ||||||| ||||| || ||||| Sbjct 23941 GAGGTGGGAATTAATGCCGCCTATGTATTAAAGCGGCTAGTTGAAATTGATCAAATGGAT 23882 Query 17250 GTGGCCGACATTCTCAACGATGACGGATCGTTAAAGGCTGTTAGCCAGTGGCCCAGATGC 17309 || |||||||||||| |||| ||| | || || || | | ||||| | | | Sbjct 23881 GTCCTCGACATTCTCAATGATGGCGGGGAACTGAAAGCCGTCAAGGATTGGCCTAAAGTC 23822 Query 17310 TGGCGTATCACGCTACAGGGCATCGACCTGGCTTCGACTATTCGCAACTTTGACGAGGAA 17369 ||||| | || || || || || || || || || | | || | || Sbjct 23821 TGGCGAACAACATTATCAGGTATGGAAGTG--TTGGA-AAT-----AGGGTCAC-AAGAC 23771 Query 17370 ACCGAAGAGACGATCCTCAAAAAGATTAAATGGCCGGACAAAGTTAAGAACCTGGAACTG 17429 || | | | | ||||| || || ||||||||||||||||| |||||||| || ||| Sbjct 23770 ACTGCCG---CTCTACTCAAGAAAATCAAATGGCCGGACAAAGTGAAGAACCTTGAGCTG 23714 Query 17430 CTTGGCAAACACGTAGATGTTCAGGCGTTCCGTGAACAGGT 17470 || || || ||| | | ||||||||| || |||||||| Sbjct 23713 CTCGGTAAGCACATTGCTGTTCAGGCATTTAAAGAACAGGT 23673 Score = 176 bits (194), Expect = 1e-39 Identities = 281/401 (70%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 19730 TGCCGTGGTCATGGATTGGCGCGGCCAATAACGACCACACGCCGGATGTTCCGCCGCTGG 19789 ||||||||||||||||||| | || || |||||||||||||||| |||||||||| Sbjct 21306 TGCCGTGGTCATGGATTGGATCAATGAACAATGACCACACGCCGGATGCACCGCCGCTGG 21247 Query 19790 CGGATATCGCCTCGATGAACATCAAGCACTACCAGGCCGAAGCGGATATCGCCGAGATTG 19849 |||||||||||| |||||||||||||||| ||||||||||| ||||| ||||| | Sbjct 21246 CGGATATCGCCTATGTGAACATCAAGCACTATCAGGCCGAAGCCGATATTGCCGAATCAG 21187 Query 19850 CCCAC-CTGTGCGGGAATCCGACCCCTACCGTTTCCGGGCTTACAGAACCCTGGGCAGAT 19908 | ||| | || |||| | |||| | | |||| || || || | ||||| ||| Sbjct 21186 CACACACCGT-CGGGCAGCCGATGGTGGCATTAACCGGACTGACTGAGACATGGGCCGAT 21128 Query 19909 AAATACCTGAAAGAAGGGATTCGCATCGGCTCAACAACCGGCGTGCTTCTGCCTGCTGGC 19968 || || | || || || |||| ||| | || | | || || | | Sbjct 21127 AAGTATTTTTCTGAGGGTTTTACGGTCGGGTCACGCAATGGAATATTACTTCCCCCAAAC 21068 Query 19969 GGGAAACTCGATATCGTCCAGGCCGAAGATCGCAACCTGCCGATTGTCGTCGCCGAACGT 20028 || | | | ||| ||| ||||||| ||||| | | || ||| || ||||| Sbjct 21067 GGCGATATGAAATTCGCCCAACCCGAAGAGCGCAATATACAAATCACCGTGGCAGAACGG 21008 Query 20029 CGCGAGAAACAGATGGCGATGCTCGGCGCGAAGCTGGTGGAGCGCGGCACCGCAGCCAGG 20088 || || || || ||||||||||| ||||| ||| | |||||||| ||||| | || | Sbjct 21007 CGAGAAAAGCAAATGGCGATGCTGGGCGCTAAGTTAGTGGAGCGTGGCACGTCGGCACGA 20948 Query 20089 ACAGCCACGCAGGCCGCCGATGAGGCGCAGACCGATAACTC 20129 ||||| || ||||| ||||||||||| || |||||||| Sbjct 20947 ACAGCTACACAGGCGCAAGATGAGGCGCAAACAGATAACTC 20907 >seq2814 Length=35408 Score = 120 bits (132), Expect = 8e-23 Identities = 365/559 (65%), Gaps = 4/559 (1%) Strand=Plus/Minus Query 3080 TTGCCCCAGTGATCCCAGCCTGGCGCCGCTGAACGGCTAAATAACTCGATGCGCGGCACG 3139 |||||||| |||||| ||| | | | ||| ||||||||| ||||| ||| Sbjct 33678 TTGCCCCAAGCATCCCAACCTTGTGACATGTCACGCGCAAATAACTCTATGCGATTAACG 33619 Query 3140 TCACCATAGAGACGTTCTAACCGATGGCGGGCCTCCCAGGGTTTCGCACTATGGCGGCCT 3199 ||||| || | |||| | || || | ||||||| || || || || ||| Sbjct 33618 TCACCGTATAATTGTTCAAGCCTATTTTTGACCTCCCACGGCTTTTGGCTGTGCTCACCT 33559 Query 3200 AACGGGCTGTAGATAACCTGTTTCACGCTGGCA-TCTTTGCGTTCGAGCCCGGCGCCGCG 3258 || || | | ||||||||| |||||||| || || || || | || |||||| Sbjct 33558 AAGCAACTAAACACAACCTGTTTAACGCTGGCGCTCATT-CGCTCTAAGCCATTGCCGCG 33500 Query 3259 GGTAGCGATAAGAAGATCCTCGGTGTTGGCCCGCGTATGGTTTCCGCCATTCATGCGCGT 3318 ||||| || | | ||||||| | || |||| || | ||| || |||||||| || Sbjct 33499 AGTAGCTATTAATACATCCTCGCTATTAGCCCTAGTGTAGTTACCACCATTCATTTTGGT 33440 Query 3319 TTGCGCGTTAAGCAGGTGCAAAAAGTCGTGAAAATCCTCAATTTCGCCAGCTTCCAGCGC 3378 || || || || || | || | ||| || |||| | |||| || ||| || Sbjct 33439 TTCTGCATTGAGTAGATCCAGGATGTCATGCCAATCAAACAGAGTGCCATTTTGCAGGGC 33380 Query 3379 TTTATTGATGTGCTGCTCTGCCAGTTGGTTGAGTTTAACCCATGTAAAGCCCTTCATGGT 3438 ||||| | | | | |||| | |||| |||||||||||||| | || || Sbjct 33379 TTTATCAAAACGTTCATGAGCCAATGAATTGAACTTAACCCATGTAAATGCTTTTGACGT 33320 Query 3439 GCGCACCGTAAAGCCCCAGGCTTCGGCCAGATCCATAGCTTCACGGTTGTGGGTGCCGGT 3498 ||| || ||||||||||| |||| ||| || || | ||||| | | | || || Sbjct 33319 GCGTACGGTAAAGCCCCATGCTTTGGCTAGCTCAAATGCTTCTTGCACAAAGTTACCTGT 33260 Query 3499 GTACCACATCGCCAGAACGGCGTTTTCTGCGGCCA-GCTCCCACACAGGGAGGCGTTTCA 3557 ||||||||| || || || | |||||||||||| | | | | || |||||| |||| | Sbjct 33259 GTACCACATGGCAAGGACTGAGTTTTCTGCGGCAATGGTATGA-ACGGGGAGGTGTTTTA 33201 Query 3558 TATCGATCAAGCTCATGGTGTCGTAATGGCTGGCTGCCGCGCCGTTGCTTACTGTGTTGC 3617 ||| | | || |||| | ||| ||| | ||| || |||||| ||| | |||| Sbjct 33200 AATCAAAAAGACTGGTGGTTTGGTAGTGGTTATTTGCGGCACCGTTGGAAACTTTATTGC 33141 Query 3618 CGTAGCTCCACGCGGGATC 3636 ||| ||| | |||||| Sbjct 33140 TGTATTGCCAAGGGGGATC 33122 >seq2546 Length=22922 Score = 87.8 bits (96), Expect = 5e-13 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 17385 CTCAAAAAGATTAAATGGCCGGACAAAGTTAAGAACCTGGAACTGCTTGGCAAACACGTA 17444 ||||| ||||| |||||||||||||| ||||||||||| ||| |||| || ||||| || Sbjct 21910 CTCAAGAAGATCAAATGGCCGGACAAGGTTAAGAACCTTGAATTGCTGGGTAAACATGTG 21851 Query 17445 GATGTTCAGGCGTTCCGTGAACAGGTGAAAACCAATCACACCG 17487 || ||||| ||||| || | || ||| || | ||||||| Sbjct 21850 TCGGTGCAGGCCTTCCGCGAGAATGTCAAAGCCGAACACACCG 21808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127790853685248