Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2252 127 2e-24 seq1739 96.9 3e-15 seq2318 87.8 1e-12 >seq2252 Length=1130325 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || ||||||||||| || || ||||| |||| | || || |||| || Sbjct 562720 AACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATCCTC 562779 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||||| || || || ||||| ||||| ||||| || || || || ||||||||||| Sbjct 562780 GAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTATCTTG 562839 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| ||| || || |||| | ||||| || || ||||||||||||| || || Sbjct 562840 AATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATGGTCTT 562899 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| ||||| || || || || ||||| Sbjct 562900 TCCGGTCAAAGTCTTCACGAAAATTTGCAT 562929 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| ||||| || || || ||||| |||| | ||| | | |||| ||||| || Sbjct 563182 ATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAACTG 563241 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || ||||| ||||| || || || ||||| |||||||||||||| || || Sbjct 563242 CTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCTTGGATCTT 563301 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| | ||| ||||| || || || || |||| || || ||||| Sbjct 563302 GGCCTTCACGTTTTCGATAGTATCAGATCCCTCGACCTCCAGGGTGATGGTCTTTCCGGT 563361 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || ||||| Sbjct 563362 CAAAGTCTTCACGAAGATTTGCAT 563385 >seq1739 Length=92152 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| |||| |||||||| || || |||||||||||||| |||||||| || Sbjct 76497 CTTACCGGCAAAGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTT 76438 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| | |||||| | ||| || || || |||| || |||||||| Sbjct 76437 CGCCTTGACGTTTTCAATTGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76378 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 | || || || || ||||||||| ||||||| Sbjct 76377 GAGCGTCTTCACGAAGATCTGCATGCCACCGCGAAG 76342 >seq2318 Length=474513 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| |||| ||||| || || || || || || || ||||| || || || Sbjct 465023 CTTACCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGGATCTT 464964 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||||| | || || || || |||| ||||||||||| Sbjct 464963 GGCCTTGACATTCTCGATGGTGTCAGAGGCCTCGACCTCGAGGGTGATGGTTTTGCCGGT 464904 Query 101446 TAAAGTTTTTACAAATATCTGCATGG 101471 ||||| || || || |||||||||| Sbjct 464903 CAAAGTCTTGACGAAAATCTGCATGG 464878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396264567902448