Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq2774 109 2e-19 seq2629 107 7e-19 seq2692 105 3e-18 seq2565 82.4 3e-11 >seq2774 Length=20939 Score = 109 bits (120), Expect = 2e-19 Identities = 207/300 (69%), Gaps = 11/300 (4%) Strand=Plus/Minus Query 29341 TTTATGTG--GTTAACCATAACGGTGAGCCATACGTTCCCATGAAACCTGTCGTTGCGGG 29398 ||||||| || ||||| | ||| ||||||||||||| ||||||||| || ||| | Sbjct 535 TTTATGTATCGTAAACCACGAAGGTAAGCCATACGTTCCAATGAAACCTATCATTGAAGA 476 Query 29399 GATGGGGCTGGCCTGGCAATCACAGTTGGCTAAGTTAAGACAGCGTTTTGCGTCAAC-TA 29457 ||||| | | ||| || ||||| ||||| ||| | | || ||| || || || Sbjct 475 TATGGGTTTAGATTGGGCGTCGCAGTTTACTAAGCTAAAAAAACGCTTTA-GTAAAGGTA 417 Query 29458 TAACGGAAATCGTTATGGTTGCTGAGGATGGGAAACGACGCAAT--ATGGTGTCCCTGCC 29515 | |||||||| || | | | | || | ||||| ||| | | ||| | Sbjct 416 TTGTGGAAATCGCAATACCTTCGAAAGGCGGTGA-----GCAATCAATGATTTGCCTAGC 362 Query 29516 ACTTCGAAAACTTGCAGGCTGGTTACAAACCATCAATCCCAACAAAGTAAAACCCGAAAT 29575 | | | ||| | |||| |||||| | | || | || |||||||| || || ||||| Sbjct 361 AATGCATAAATTATCAGGTTGGTTATATTCAATAATGCCTAACAAAGTTAAGCCTGAAAT 302 Query 29576 CCGCGACAAGGTAATCCAGTATCAGGAAGAGTGCGACGATGTTCTCTATGAATACTGGAC 29635 ||| ||||| ||||||||||| || ||||| |||||||| || || ||||| || ||||| Sbjct 301 CCGAGACAAAGTAATCCAGTACCAAGAAGAATGCGACGACGTACTTTATGAGTATTGGAC 242 >seq2629 Length=15125 Score = 107 bits (118), Expect = 7e-19 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22114 GACAAGCTGAAAGCGCGCAGGAGGGACTTACAGCCCCGCAGTTACTGGATTAAGCAGGCA 22173 || || || ||||| |||| | | || | ||||||||||| |||||||| || ||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 22174 CAACAGGCTGTGAATGCTTATATCAGGGAGCGGGACCGTCATTTGCCGTGTGTTTCATGC 22233 ||||| || || || || |||||||| || | |||||| ||||||| || | |||||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 22234 GGGACGTTCGATTCAGCCCAGTGGGATGCAGG 22265 || ||||| | || || ||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2692 Length=686 Score = 105 bits (116), Expect = 3e-18 Identities = 254/379 (67%), Gaps = 4/379 (1%) Strand=Plus/Minus Query 28572 ATCCTCGACCAGTTTCTGGATGAAAAGGAAGGCAACCACACCACGGCATACCGTGATGGT 28631 || |||| |||||| |||||||||| || ||||||| |||| || || |||| Sbjct 637 ATTCTCGCTCAGTTTTTGGATGAAAAAGAGGGCAACCGATTATCGGCGTATCGGGATGCA 578 Query 28632 GTGGGTATCTGGACCATCTGCCGTGGTGCCACCCAGGTGGATGGTAAGCTTGT-CGTCCC 28690 | || |||||||| |||||||| || | |||| | |||||| | || |||| Sbjct 577 GCTGGCATCTGGACAATCTGCCGGGGCGTAACCCGAATTGATGGTGCTCCCGTTCGTCAG 518 Query 28691 CGGCATGAAGTTGTCGAAGGAAAAATGCGACCAGGTTAACGCCATTGAACGTGATAAGGC 28750 || ||| | || | | | ||||| | | ||||||| ||| ||| |||| Sbjct 517 -GGTATGCAACTGACACCGAACCAATGCCGTGATCTCAACGCCAAAGAAGCAGATCAGGC 459 Query 28751 GCTGGCATGGGTGGCGAAAAACATCAGAGTGCCACTGACCGAACCTCAGAAAGCGGGGAT 28810 | |||||||| | | || | ||||||||||| ||||| |||| ||| || || Sbjct 458 CGTTGCATGGGTCAGAAGCCATATTAACGTGCCACTGACTGAACCACAGATAGCCGGCAT 399 Query 28811 CGCGTCATTCTGTCCTTACAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAA 28870 || ||||| || |||||||| |||||||||| || ||| | || ||||| || Sbjct 398 TGCCAGTTTCTGCCCATACAACATCGGCCCCGGTAGATGCTTCTCTTCCACGTTCTACCG 339 Query 28871 ACGAATTAATGCAGGCGAT-CGCAGGGGAGCGTGTGAAGCGATTCGCTGGTGGATTAAGG 28929 | | | ||||| || ||| ||| ||| || ||| | | ||| | ||||| | Sbjct 338 AAAACTGAATGCGGGTGATAGGCAAGGG-GCTTGTCAGGAAATTAAACGCTGGATATTTG 280 Query 28930 ACGGTGGCAGAGACTGCCG 28948 |||| |||||||| ||||| Sbjct 279 ACGGCGGCAGAGATTGCCG 261 >seq2565 Length=10326 Score = 82.4 bits (90), Expect = 3e-11 Identities = 92/117 (79%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 14204 CTGCCAGTGTTGCCCGTTCTCACGCCGTT-CTCGCTCTCGCGCGGGGATACTC-TCTCAT 14261 ||||||||||| ||||||| | | ||||| ||| |||||| |||| | || || || ||| Sbjct 4816 CTGCCAGTGTTCCCCGTTCGCGC-CCGTTACTCACTCTCGTGCGGAGCTAATCATCCCAT 4874 Query 14262 CGACCGGATCGCACCCGATGATACA--GCA--CGTTTACGTGTAGGGGTCTAAACAG 14314 |||||||||||| |||||| |||| ||| || | | ||||||||||||||| Sbjct 4875 CGACCGGATCGCGTCCGATGGTACATCGCAGTACTTCATGCATAGGGGTCTAAACAG 4931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194732576919808