Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2252 84.2 2e-11 seq2162 84.2 2e-11 >seq2252 Length=1130325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || || | | | || | || || | |||||| ||||| || Sbjct 562236 TCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 562295 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| ||||| || || | ||| | ||||||||| || |||||| || || Sbjct 562296 ATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTC 562355 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||| ||||||| || || || ||||| ||||||||||| || Sbjct 562356 TCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTTTTCACG 562415 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 562416 AAGATCTGCAT 562426 >seq2162 Length=74254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| ||| | | | || | || ||||||||| Sbjct 49301 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGC 49242 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||| ||||| || || | |||| || |||||||| ||||| Sbjct 49241 TTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGGATCTTA 49182 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| || | | | || || |||| ||||| | || |||||||| || ||| Sbjct 49181 GCTTTCACGTTTTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATCGTTTTGCCTGTC 49122 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | ||| || ||||| ||||||||| Sbjct 49121 AGAGTCTTGACAAAGATCTGCATC 49098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380924303373072